Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4098 and EX28DRAFT_4099 overlap by 10 nucleotides EX28DRAFT_4099 and EX28DRAFT_4100 overlap by 14 nucleotides EX28DRAFT_4100 and EX28DRAFT_4101 overlap by 8 nucleotides EX28DRAFT_4101 and EX28DRAFT_4102 are separated by 6 nucleotides EX28DRAFT_4102 and EX28DRAFT_4103 are separated by 10 nucleotides
EX28DRAFT_4098: EX28DRAFT_4098 - Predicted acyltransferase, at 71,866 to 73,557
_4098
EX28DRAFT_4099: EX28DRAFT_4099 - 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases, at 73,548 to 73,901
_4099
EX28DRAFT_4100: EX28DRAFT_4100 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 73,888 to 75,249
_4100
EX28DRAFT_4101: EX28DRAFT_4101 - Predicted membrane protein, at 75,242 to 75,829
_4101
EX28DRAFT_4102: EX28DRAFT_4102 - Acyl carrier protein, at 75,836 to 76,087
_4102
EX28DRAFT_4103: EX28DRAFT_4103 - Acyl carrier protein, at 76,098 to 76,355
_4103
Position (kb) 73
74
75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 72.900 kb on + strand, within EX28DRAFT_4098 at 72.908 kb on - strand, within EX28DRAFT_4098 at 73.188 kb on - strand, within EX28DRAFT_4098 at 73.188 kb on - strand, within EX28DRAFT_4098 at 73.252 kb on - strand, within EX28DRAFT_4098 at 73.302 kb on - strand, within EX28DRAFT_4098 at 73.382 kb on - strand, within EX28DRAFT_4098 at 73.558 kb on - strand at 73.558 kb on - strand at 73.613 kb on - strand, within EX28DRAFT_4099 at 73.751 kb on - strand, within EX28DRAFT_4099 at 73.751 kb on - strand, within EX28DRAFT_4099 at 73.906 kb on + strand at 73.907 kb on - strand at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.056 kb on - strand, within EX28DRAFT_4100 at 74.586 kb on - strand, within EX28DRAFT_4100 at 74.625 kb on - strand, within EX28DRAFT_4100 at 74.627 kb on + strand, within EX28DRAFT_4100 at 74.628 kb on - strand, within EX28DRAFT_4100 at 74.727 kb on + strand, within EX28DRAFT_4100 at 75.069 kb on - strand, within EX28DRAFT_4100 at 75.130 kb on + strand at 75.130 kb on + strand at 75.196 kb on - strand at 75.267 kb on - strand at 75.321 kb on + strand, within EX28DRAFT_4101 at 75.321 kb on + strand, within EX28DRAFT_4101 at 75.321 kb on + strand, within EX28DRAFT_4101 at 75.321 kb on + strand, within EX28DRAFT_4101 at 75.321 kb on + strand, within EX28DRAFT_4101 at 75.322 kb on - strand, within EX28DRAFT_4101 at 75.322 kb on - strand, within EX28DRAFT_4101 at 75.597 kb on + strand, within EX28DRAFT_4101 at 75.648 kb on + strand, within EX28DRAFT_4101 at 75.837 kb on + strand at 75.838 kb on - strand at 75.838 kb on - strand at 75.869 kb on + strand, within EX28DRAFT_4102 at 75.870 kb on - strand, within EX28DRAFT_4102 at 76.065 kb on + strand at 76.193 kb on - strand, within EX28DRAFT_4103 at 76.233 kb on - strand, within EX28DRAFT_4103
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 72,900 + EX28DRAFT_4098 0.61 +1.0 72,908 - EX28DRAFT_4098 0.62 -0.5 73,188 - EX28DRAFT_4098 0.78 +0.4 73,188 - EX28DRAFT_4098 0.78 +0.4 73,252 - EX28DRAFT_4098 0.82 +0.1 73,302 - EX28DRAFT_4098 0.85 +0.4 73,382 - EX28DRAFT_4098 0.90 -0.7 73,558 - -0.4 73,558 - +1.2 73,613 - EX28DRAFT_4099 0.18 -0.4 73,751 - EX28DRAFT_4099 0.57 +1.3 73,751 - EX28DRAFT_4099 0.57 -0.9 73,906 + +0.5 73,907 - -2.1 74,055 + EX28DRAFT_4100 0.12 -2.6 74,055 + EX28DRAFT_4100 0.12 -0.2 74,055 + EX28DRAFT_4100 0.12 +0.2 74,055 + EX28DRAFT_4100 0.12 -1.6 74,055 + EX28DRAFT_4100 0.12 -3.4 74,055 + EX28DRAFT_4100 0.12 +1.4 74,055 + EX28DRAFT_4100 0.12 -0.3 74,055 + EX28DRAFT_4100 0.12 +0.4 74,056 - EX28DRAFT_4100 0.12 -2.2 74,586 - EX28DRAFT_4100 0.51 +1.1 74,625 - EX28DRAFT_4100 0.54 +0.6 74,627 + EX28DRAFT_4100 0.54 +2.2 74,628 - EX28DRAFT_4100 0.54 -1.1 74,727 + EX28DRAFT_4100 0.62 +0.4 75,069 - EX28DRAFT_4100 0.87 +1.2 75,130 + +0.3 75,130 + -0.6 75,196 - -1.5 75,267 - +0.8 75,321 + EX28DRAFT_4101 0.13 -0.5 75,321 + EX28DRAFT_4101 0.13 +0.3 75,321 + EX28DRAFT_4101 0.13 +0.2 75,321 + EX28DRAFT_4101 0.13 -0.4 75,321 + EX28DRAFT_4101 0.13 +0.4 75,322 - EX28DRAFT_4101 0.14 -0.8 75,322 - EX28DRAFT_4101 0.14 +0.1 75,597 + EX28DRAFT_4101 0.60 +0.2 75,648 + EX28DRAFT_4101 0.69 -1.8 75,837 + +0.2 75,838 - -0.5 75,838 - +0.9 75,869 + EX28DRAFT_4102 0.13 +2.2 75,870 - EX28DRAFT_4102 0.13 +0.9 76,065 + -1.2 76,193 - EX28DRAFT_4103 0.37 +0.6 76,233 - EX28DRAFT_4103 0.52 +0.0
Or see this region's nucleotide sequence