Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4059

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4057 and EX28DRAFT_4058 are separated by 267 nucleotidesEX28DRAFT_4058 and EX28DRAFT_4059 are separated by 148 nucleotidesEX28DRAFT_4059 and EX28DRAFT_4060 are separated by 59 nucleotides EX28DRAFT_4057: EX28DRAFT_4057 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 30,770 to 31,528 _4057 EX28DRAFT_4058: EX28DRAFT_4058 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 31,796 to 32,335 _4058 EX28DRAFT_4059: EX28DRAFT_4059 - hypothetical protein, at 32,484 to 34,073 _4059 EX28DRAFT_4060: EX28DRAFT_4060 - Neutral trehalase, at 34,133 to 35,782 _4060 Position (kb) 32 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 31.572 kb on + strandat 31.573 kb on - strandat 31.573 kb on - strandat 31.645 kb on + strandat 31.782 kb on + strandat 31.783 kb on - strandat 31.807 kb on + strandat 31.826 kb on + strandat 31.830 kb on - strandat 31.830 kb on - strandat 31.869 kb on + strand, within EX28DRAFT_4058at 31.870 kb on - strand, within EX28DRAFT_4058at 31.872 kb on + strand, within EX28DRAFT_4058at 31.872 kb on + strand, within EX28DRAFT_4058at 31.873 kb on - strand, within EX28DRAFT_4058at 31.873 kb on - strand, within EX28DRAFT_4058at 31.884 kb on - strand, within EX28DRAFT_4058at 32.093 kb on - strand, within EX28DRAFT_4058at 32.135 kb on + strand, within EX28DRAFT_4058at 32.136 kb on - strand, within EX28DRAFT_4058at 32.262 kb on - strand, within EX28DRAFT_4058at 32.357 kb on + strandat 32.368 kb on - strandat 32.416 kb on - strandat 32.418 kb on - strandat 32.507 kb on + strandat 32.581 kb on + strandat 32.582 kb on - strandat 32.582 kb on - strandat 32.582 kb on - strandat 32.582 kb on - strandat 32.847 kb on + strand, within EX28DRAFT_4059at 32.981 kb on + strand, within EX28DRAFT_4059at 32.982 kb on - strand, within EX28DRAFT_4059at 33.264 kb on + strand, within EX28DRAFT_4059at 33.264 kb on + strand, within EX28DRAFT_4059at 33.264 kb on + strand, within EX28DRAFT_4059at 33.265 kb on - strand, within EX28DRAFT_4059at 33.265 kb on - strand, within EX28DRAFT_4059at 33.347 kb on - strand, within EX28DRAFT_4059at 33.347 kb on - strand, within EX28DRAFT_4059at 33.924 kb on + strandat 33.925 kb on - strandat 34.056 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.147 kb on - strandat 34.147 kb on - strandat 34.251 kb on + strandat 34.252 kb on - strandat 34.252 kb on - strandat 34.252 kb on - strandat 34.298 kb on - strand, within EX28DRAFT_4060at 34.515 kb on + strand, within EX28DRAFT_4060at 34.515 kb on + strand, within EX28DRAFT_4060at 34.745 kb on - strand, within EX28DRAFT_4060

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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31,572 + -2.0
31,573 - +0.6
31,573 - +1.8
31,645 + +0.3
31,782 + -0.8
31,783 - -0.0
31,807 + +0.5
31,826 + +0.2
31,830 - -0.2
31,830 - +1.3
31,869 + EX28DRAFT_4058 0.14 -1.5
31,870 - EX28DRAFT_4058 0.14 -0.2
31,872 + EX28DRAFT_4058 0.14 -0.3
31,872 + EX28DRAFT_4058 0.14 -0.3
31,873 - EX28DRAFT_4058 0.14 -0.4
31,873 - EX28DRAFT_4058 0.14 +0.7
31,884 - EX28DRAFT_4058 0.16 +0.6
32,093 - EX28DRAFT_4058 0.55 +0.4
32,135 + EX28DRAFT_4058 0.63 +0.1
32,136 - EX28DRAFT_4058 0.63 +0.6
32,262 - EX28DRAFT_4058 0.86 +0.3
32,357 + -0.3
32,368 - -1.2
32,416 - -1.1
32,418 - +0.9
32,507 + +0.5
32,581 + -2.4
32,582 - +0.0
32,582 - -0.9
32,582 - +0.6
32,582 - -1.7
32,847 + EX28DRAFT_4059 0.23 +0.2
32,981 + EX28DRAFT_4059 0.31 +0.8
32,982 - EX28DRAFT_4059 0.31 +0.9
33,264 + EX28DRAFT_4059 0.49 +0.5
33,264 + EX28DRAFT_4059 0.49 -0.5
33,264 + EX28DRAFT_4059 0.49 +0.7
33,265 - EX28DRAFT_4059 0.49 +2.0
33,265 - EX28DRAFT_4059 0.49 +0.5
33,347 - EX28DRAFT_4059 0.54 +0.8
33,347 - EX28DRAFT_4059 0.54 +1.0
33,924 + -0.1
33,925 - -2.5
34,056 + +0.3
34,146 + +0.2
34,146 + +1.7
34,147 - +0.3
34,147 - +0.7
34,251 + +0.5
34,252 - -0.3
34,252 - +1.3
34,252 - +0.8
34,298 - EX28DRAFT_4060 0.10 -2.7
34,515 + EX28DRAFT_4060 0.23 +1.3
34,515 + EX28DRAFT_4060 0.23 +0.1
34,745 - EX28DRAFT_4060 0.37 +0.1

Or see this region's nucleotide sequence