Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4053

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4052 and EX28DRAFT_4053 are separated by 65 nucleotidesEX28DRAFT_4053 and EX28DRAFT_4054 are separated by 60 nucleotides EX28DRAFT_4052: EX28DRAFT_4052 - FOG: EAL domain, at 24,148 to 24,921 _4052 EX28DRAFT_4053: EX28DRAFT_4053 - Uncharacterized protein involved in outer membrane biogenesis, at 24,987 to 27,029 _4053 EX28DRAFT_4054: EX28DRAFT_4054 - metabolite-proton symporter, at 27,090 to 28,412 _4054 Position (kb) 24 25 26 27 28Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 24.046 kb on + strandat 24.074 kb on + strandat 24.075 kb on - strandat 24.198 kb on + strandat 24.198 kb on + strandat 24.247 kb on + strand, within EX28DRAFT_4052at 24.248 kb on - strand, within EX28DRAFT_4052at 24.253 kb on + strand, within EX28DRAFT_4052at 24.254 kb on - strand, within EX28DRAFT_4052at 24.265 kb on + strand, within EX28DRAFT_4052at 24.355 kb on + strand, within EX28DRAFT_4052at 24.411 kb on + strand, within EX28DRAFT_4052at 24.411 kb on + strand, within EX28DRAFT_4052at 24.412 kb on - strand, within EX28DRAFT_4052at 24.412 kb on - strand, within EX28DRAFT_4052at 24.682 kb on + strand, within EX28DRAFT_4052at 24.687 kb on + strand, within EX28DRAFT_4052at 24.687 kb on + strand, within EX28DRAFT_4052at 24.687 kb on + strand, within EX28DRAFT_4052at 24.687 kb on + strand, within EX28DRAFT_4052at 24.688 kb on - strand, within EX28DRAFT_4052at 24.712 kb on - strand, within EX28DRAFT_4052at 24.712 kb on - strand, within EX28DRAFT_4052at 24.712 kb on - strand, within EX28DRAFT_4052at 24.758 kb on + strand, within EX28DRAFT_4052at 24.759 kb on - strand, within EX28DRAFT_4052at 24.759 kb on - strand, within EX28DRAFT_4052at 24.862 kb on + strandat 24.862 kb on + strandat 24.863 kb on - strandat 24.865 kb on + strandat 24.866 kb on - strandat 24.906 kb on + strandat 24.907 kb on - strandat 24.908 kb on + strandat 24.949 kb on + strandat 24.949 kb on + strandat 24.955 kb on + strandat 25.061 kb on + strandat 25.061 kb on + strandat 25.062 kb on - strandat 25.154 kb on - strandat 25.482 kb on - strand, within EX28DRAFT_4053at 25.621 kb on + strand, within EX28DRAFT_4053at 25.621 kb on + strand, within EX28DRAFT_4053at 25.621 kb on + strand, within EX28DRAFT_4053at 25.622 kb on - strand, within EX28DRAFT_4053at 25.629 kb on + strand, within EX28DRAFT_4053at 25.629 kb on + strand, within EX28DRAFT_4053at 25.629 kb on + strand, within EX28DRAFT_4053at 25.629 kb on + strand, within EX28DRAFT_4053at 25.630 kb on - strand, within EX28DRAFT_4053at 25.630 kb on - strand, within EX28DRAFT_4053at 25.630 kb on - strand, within EX28DRAFT_4053at 25.860 kb on + strand, within EX28DRAFT_4053at 26.013 kb on + strand, within EX28DRAFT_4053at 26.014 kb on - strand, within EX28DRAFT_4053at 26.117 kb on + strand, within EX28DRAFT_4053at 26.252 kb on + strand, within EX28DRAFT_4053at 26.447 kb on - strand, within EX28DRAFT_4053at 26.619 kb on + strand, within EX28DRAFT_4053at 26.619 kb on + strand, within EX28DRAFT_4053at 26.619 kb on + strand, within EX28DRAFT_4053at 26.619 kb on + strand, within EX28DRAFT_4053at 26.620 kb on - strand, within EX28DRAFT_4053at 26.622 kb on - strand, within EX28DRAFT_4053at 26.714 kb on - strand, within EX28DRAFT_4053at 26.714 kb on - strand, within EX28DRAFT_4053at 26.845 kb on - strandat 26.845 kb on - strandat 27.005 kb on + strandat 27.028 kb on - strandat 27.028 kb on - strandat 27.092 kb on - strandat 27.163 kb on + strandat 27.176 kb on - strandat 27.187 kb on + strandat 27.188 kb on - strandat 27.214 kb on + strandat 27.214 kb on + strandat 27.214 kb on + strandat 27.384 kb on - strand, within EX28DRAFT_4054at 27.551 kb on + strand, within EX28DRAFT_4054at 27.599 kb on + strand, within EX28DRAFT_4054at 27.605 kb on - strand, within EX28DRAFT_4054at 27.619 kb on + strand, within EX28DRAFT_4054at 27.619 kb on + strand, within EX28DRAFT_4054at 27.620 kb on - strand, within EX28DRAFT_4054at 27.620 kb on - strand, within EX28DRAFT_4054at 27.631 kb on + strand, within EX28DRAFT_4054at 27.631 kb on + strand, within EX28DRAFT_4054at 27.631 kb on + strand, within EX28DRAFT_4054at 27.632 kb on - strand, within EX28DRAFT_4054at 27.632 kb on - strand, within EX28DRAFT_4054at 27.632 kb on - strand, within EX28DRAFT_4054at 27.772 kb on + strand, within EX28DRAFT_4054at 27.806 kb on + strand, within EX28DRAFT_4054

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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24,046 + +0.0
24,074 + +0.6
24,075 - -0.2
24,198 + -1.8
24,198 + -0.3
24,247 + EX28DRAFT_4052 0.13 -1.3
24,248 - EX28DRAFT_4052 0.13 +0.7
24,253 + EX28DRAFT_4052 0.14 +0.3
24,254 - EX28DRAFT_4052 0.14 +0.5
24,265 + EX28DRAFT_4052 0.15 +2.1
24,355 + EX28DRAFT_4052 0.27 +2.6
24,411 + EX28DRAFT_4052 0.34 +1.0
24,411 + EX28DRAFT_4052 0.34 -2.6
24,412 - EX28DRAFT_4052 0.34 -0.7
24,412 - EX28DRAFT_4052 0.34 -0.5
24,682 + EX28DRAFT_4052 0.69 -0.3
24,687 + EX28DRAFT_4052 0.70 -2.2
24,687 + EX28DRAFT_4052 0.70 +0.4
24,687 + EX28DRAFT_4052 0.70 +0.3
24,687 + EX28DRAFT_4052 0.70 +0.0
24,688 - EX28DRAFT_4052 0.70 -0.5
24,712 - EX28DRAFT_4052 0.73 -1.0
24,712 - EX28DRAFT_4052 0.73 -1.6
24,712 - EX28DRAFT_4052 0.73 -1.2
24,758 + EX28DRAFT_4052 0.79 +0.2
24,759 - EX28DRAFT_4052 0.79 -1.8
24,759 - EX28DRAFT_4052 0.79 +0.2
24,862 + +0.8
24,862 + +0.7
24,863 - -0.6
24,865 + -1.0
24,866 - +0.6
24,906 + -0.0
24,907 - +0.1
24,908 + +1.0
24,949 + +0.5
24,949 + -0.9
24,955 + +0.4
25,061 + +0.6
25,061 + +0.0
25,062 - +1.8
25,154 - +0.5
25,482 - EX28DRAFT_4053 0.24 -3.8
25,621 + EX28DRAFT_4053 0.31 -0.1
25,621 + EX28DRAFT_4053 0.31 -0.6
25,621 + EX28DRAFT_4053 0.31 +0.8
25,622 - EX28DRAFT_4053 0.31 +0.6
25,629 + EX28DRAFT_4053 0.31 +1.7
25,629 + EX28DRAFT_4053 0.31 -1.4
25,629 + EX28DRAFT_4053 0.31 -2.8
25,629 + EX28DRAFT_4053 0.31 -2.1
25,630 - EX28DRAFT_4053 0.31 +0.5
25,630 - EX28DRAFT_4053 0.31 +0.2
25,630 - EX28DRAFT_4053 0.31 -0.5
25,860 + EX28DRAFT_4053 0.43 +0.7
26,013 + EX28DRAFT_4053 0.50 +0.1
26,014 - EX28DRAFT_4053 0.50 -1.3
26,117 + EX28DRAFT_4053 0.55 +0.5
26,252 + EX28DRAFT_4053 0.62 +0.3
26,447 - EX28DRAFT_4053 0.71 -0.5
26,619 + EX28DRAFT_4053 0.80 +0.1
26,619 + EX28DRAFT_4053 0.80 +0.9
26,619 + EX28DRAFT_4053 0.80 +4.6
26,619 + EX28DRAFT_4053 0.80 +1.1
26,620 - EX28DRAFT_4053 0.80 -0.3
26,622 - EX28DRAFT_4053 0.80 +0.3
26,714 - EX28DRAFT_4053 0.85 -0.1
26,714 - EX28DRAFT_4053 0.85 -2.1
26,845 - -0.6
26,845 - -2.4
27,005 + +0.5
27,028 - +0.7
27,028 - +0.2
27,092 - +0.8
27,163 + -0.9
27,176 - -0.0
27,187 + -0.1
27,188 - -0.8
27,214 + -2.0
27,214 + +0.8
27,214 + +0.1
27,384 - EX28DRAFT_4054 0.22 -1.0
27,551 + EX28DRAFT_4054 0.35 +0.8
27,599 + EX28DRAFT_4054 0.38 -1.2
27,605 - EX28DRAFT_4054 0.39 -0.6
27,619 + EX28DRAFT_4054 0.40 -0.8
27,619 + EX28DRAFT_4054 0.40 -0.1
27,620 - EX28DRAFT_4054 0.40 +0.2
27,620 - EX28DRAFT_4054 0.40 -2.4
27,631 + EX28DRAFT_4054 0.41 -0.2
27,631 + EX28DRAFT_4054 0.41 +0.1
27,631 + EX28DRAFT_4054 0.41 +0.8
27,632 - EX28DRAFT_4054 0.41 +1.0
27,632 - EX28DRAFT_4054 0.41 -0.7
27,632 - EX28DRAFT_4054 0.41 +0.9
27,772 + EX28DRAFT_4054 0.52 +2.4
27,806 + EX28DRAFT_4054 0.54 -0.5

Or see this region's nucleotide sequence