Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4047 and EX28DRAFT_4048 are separated by 119 nucleotides EX28DRAFT_4048 and EX28DRAFT_4049 are separated by 159 nucleotides
EX28DRAFT_4047: EX28DRAFT_4047 - Tetratricopeptide repeat/Cellulose synthase operon protein C C-terminus (BCSC_C)/TPR repeat, at 14,150 to 17,632
_4047
EX28DRAFT_4048: EX28DRAFT_4048 - FOG: EAL domain, at 17,752 to 19,758
_4048
EX28DRAFT_4049: EX28DRAFT_4049 - Na+/H+-dicarboxylate symporters, at 19,918 to 21,204
_4049
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 16.784 kb on - strand, within EX28DRAFT_4047 at 16.856 kb on + strand, within EX28DRAFT_4047 at 16.856 kb on + strand, within EX28DRAFT_4047 at 16.885 kb on + strand, within EX28DRAFT_4047 at 16.886 kb on - strand, within EX28DRAFT_4047 at 16.948 kb on + strand, within EX28DRAFT_4047 at 16.949 kb on - strand, within EX28DRAFT_4047 at 16.978 kb on - strand, within EX28DRAFT_4047 at 16.999 kb on - strand, within EX28DRAFT_4047 at 17.009 kb on + strand, within EX28DRAFT_4047 at 17.009 kb on + strand, within EX28DRAFT_4047 at 17.010 kb on - strand, within EX28DRAFT_4047 at 17.084 kb on - strand, within EX28DRAFT_4047 at 17.111 kb on + strand, within EX28DRAFT_4047 at 17.114 kb on + strand, within EX28DRAFT_4047 at 17.114 kb on + strand, within EX28DRAFT_4047 at 17.115 kb on - strand, within EX28DRAFT_4047 at 17.117 kb on + strand, within EX28DRAFT_4047 at 17.167 kb on + strand, within EX28DRAFT_4047 at 17.168 kb on - strand, within EX28DRAFT_4047 at 17.203 kb on + strand, within EX28DRAFT_4047 at 17.204 kb on - strand, within EX28DRAFT_4047 at 17.204 kb on - strand, within EX28DRAFT_4047 at 17.226 kb on - strand, within EX28DRAFT_4047 at 17.240 kb on + strand, within EX28DRAFT_4047 at 17.240 kb on + strand, within EX28DRAFT_4047 at 17.240 kb on + strand, within EX28DRAFT_4047 at 17.240 kb on + strand, within EX28DRAFT_4047 at 17.240 kb on + strand, within EX28DRAFT_4047 at 17.241 kb on - strand, within EX28DRAFT_4047 at 17.241 kb on - strand, within EX28DRAFT_4047 at 17.329 kb on + strand at 17.330 kb on - strand at 17.394 kb on - strand at 17.445 kb on - strand at 17.494 kb on - strand at 17.494 kb on - strand at 17.494 kb on - strand at 17.529 kb on - strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.553 kb on - strand at 17.656 kb on + strand at 17.656 kb on + strand at 17.657 kb on - strand at 17.689 kb on - strand at 17.708 kb on - strand at 17.807 kb on + strand at 17.819 kb on + strand at 17.819 kb on + strand at 17.888 kb on + strand at 17.889 kb on - strand at 17.895 kb on + strand at 17.895 kb on + strand at 18.163 kb on + strand, within EX28DRAFT_4048 at 18.173 kb on + strand, within EX28DRAFT_4048 at 18.198 kb on + strand, within EX28DRAFT_4048 at 18.243 kb on - strand, within EX28DRAFT_4048 at 18.247 kb on - strand, within EX28DRAFT_4048 at 18.256 kb on - strand, within EX28DRAFT_4048 at 18.333 kb on + strand, within EX28DRAFT_4048 at 18.374 kb on + strand, within EX28DRAFT_4048 at 18.401 kb on + strand, within EX28DRAFT_4048 at 18.401 kb on + strand, within EX28DRAFT_4048 at 18.401 kb on + strand, within EX28DRAFT_4048 at 18.402 kb on - strand, within EX28DRAFT_4048 at 18.405 kb on + strand, within EX28DRAFT_4048 at 18.406 kb on - strand, within EX28DRAFT_4048 at 18.406 kb on - strand, within EX28DRAFT_4048 at 18.421 kb on + strand, within EX28DRAFT_4048 at 18.464 kb on + strand, within EX28DRAFT_4048 at 18.464 kb on + strand, within EX28DRAFT_4048 at 18.507 kb on + strand, within EX28DRAFT_4048 at 18.508 kb on - strand, within EX28DRAFT_4048 at 18.850 kb on + strand, within EX28DRAFT_4048 at 18.850 kb on + strand, within EX28DRAFT_4048 at 18.851 kb on - strand, within EX28DRAFT_4048 at 18.851 kb on - strand, within EX28DRAFT_4048 at 18.851 kb on - strand, within EX28DRAFT_4048 at 18.880 kb on + strand, within EX28DRAFT_4048 at 19.125 kb on - strand, within EX28DRAFT_4048 at 19.275 kb on + strand, within EX28DRAFT_4048 at 19.339 kb on - strand, within EX28DRAFT_4048 at 19.339 kb on - strand, within EX28DRAFT_4048 at 19.344 kb on - strand, within EX28DRAFT_4048 at 19.605 kb on + strand at 19.606 kb on - strand at 19.841 kb on + strand at 19.842 kb on - strand at 19.883 kb on - strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.945 kb on + strand at 19.945 kb on + strand at 19.994 kb on - strand at 19.996 kb on + strand at 20.237 kb on + strand, within EX28DRAFT_4049 at 20.238 kb on - strand, within EX28DRAFT_4049 at 20.436 kb on + strand, within EX28DRAFT_4049 at 20.437 kb on - strand, within EX28DRAFT_4049 at 20.442 kb on + strand, within EX28DRAFT_4049 at 20.443 kb on - strand, within EX28DRAFT_4049 at 20.488 kb on - strand, within EX28DRAFT_4049 at 20.535 kb on + strand, within EX28DRAFT_4049 at 20.544 kb on + strand, within EX28DRAFT_4049 at 20.544 kb on + strand, within EX28DRAFT_4049 at 20.544 kb on + strand, within EX28DRAFT_4049 at 20.545 kb on - strand, within EX28DRAFT_4049 at 20.545 kb on - strand, within EX28DRAFT_4049 at 20.548 kb on + strand, within EX28DRAFT_4049 at 20.548 kb on + strand, within EX28DRAFT_4049 at 20.587 kb on - strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.597 kb on - strand, within EX28DRAFT_4049 at 20.598 kb on + strand, within EX28DRAFT_4049 at 20.599 kb on - strand, within EX28DRAFT_4049 at 20.680 kb on + strand, within EX28DRAFT_4049 at 20.743 kb on - strand, within EX28DRAFT_4049
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 16,784 - EX28DRAFT_4047 0.76 +0.5 16,856 + EX28DRAFT_4047 0.78 -0.0 16,856 + EX28DRAFT_4047 0.78 +0.7 16,885 + EX28DRAFT_4047 0.79 +0.8 16,886 - EX28DRAFT_4047 0.79 +0.4 16,948 + EX28DRAFT_4047 0.80 +1.4 16,949 - EX28DRAFT_4047 0.80 -1.6 16,978 - EX28DRAFT_4047 0.81 +1.2 16,999 - EX28DRAFT_4047 0.82 +0.3 17,009 + EX28DRAFT_4047 0.82 -3.6 17,009 + EX28DRAFT_4047 0.82 +0.6 17,010 - EX28DRAFT_4047 0.82 -0.9 17,084 - EX28DRAFT_4047 0.84 -0.7 17,111 + EX28DRAFT_4047 0.85 -1.7 17,114 + EX28DRAFT_4047 0.85 +2.7 17,114 + EX28DRAFT_4047 0.85 +0.2 17,115 - EX28DRAFT_4047 0.85 +0.9 17,117 + EX28DRAFT_4047 0.85 -0.2 17,167 + EX28DRAFT_4047 0.87 +0.1 17,168 - EX28DRAFT_4047 0.87 -0.3 17,203 + EX28DRAFT_4047 0.88 +1.4 17,204 - EX28DRAFT_4047 0.88 -0.2 17,204 - EX28DRAFT_4047 0.88 +0.0 17,226 - EX28DRAFT_4047 0.88 -2.3 17,240 + EX28DRAFT_4047 0.89 -0.8 17,240 + EX28DRAFT_4047 0.89 +0.4 17,240 + EX28DRAFT_4047 0.89 -0.8 17,240 + EX28DRAFT_4047 0.89 +0.8 17,240 + EX28DRAFT_4047 0.89 +0.2 17,241 - EX28DRAFT_4047 0.89 -2.3 17,241 - EX28DRAFT_4047 0.89 -0.2 17,329 + -3.0 17,330 - -0.4 17,394 - -0.4 17,445 - -0.9 17,494 - +1.8 17,494 - -0.2 17,494 - -1.6 17,529 - +2.0 17,552 + -0.8 17,552 + +2.4 17,552 + +1.0 17,552 + +2.5 17,552 + -0.0 17,552 + +0.6 17,552 + -0.1 17,552 + -0.1 17,553 - -1.1 17,656 + -0.3 17,656 + -1.4 17,657 - -0.3 17,689 - +0.9 17,708 - -0.8 17,807 + -2.1 17,819 + -1.1 17,819 + -3.1 17,888 + -0.0 17,889 - -1.5 17,895 + -0.8 17,895 + -1.6 18,163 + EX28DRAFT_4048 0.20 -4.4 18,173 + EX28DRAFT_4048 0.21 -2.5 18,198 + EX28DRAFT_4048 0.22 -0.9 18,243 - EX28DRAFT_4048 0.24 -1.2 18,247 - EX28DRAFT_4048 0.25 -0.1 18,256 - EX28DRAFT_4048 0.25 -2.2 18,333 + EX28DRAFT_4048 0.29 +0.5 18,374 + EX28DRAFT_4048 0.31 -2.3 18,401 + EX28DRAFT_4048 0.32 -0.9 18,401 + EX28DRAFT_4048 0.32 -1.1 18,401 + EX28DRAFT_4048 0.32 -1.7 18,402 - EX28DRAFT_4048 0.32 -0.8 18,405 + EX28DRAFT_4048 0.33 +0.1 18,406 - EX28DRAFT_4048 0.33 -0.5 18,406 - EX28DRAFT_4048 0.33 -1.0 18,421 + EX28DRAFT_4048 0.33 -1.0 18,464 + EX28DRAFT_4048 0.35 +0.1 18,464 + EX28DRAFT_4048 0.35 +0.3 18,507 + EX28DRAFT_4048 0.38 +0.2 18,508 - EX28DRAFT_4048 0.38 +0.9 18,850 + EX28DRAFT_4048 0.55 +0.3 18,850 + EX28DRAFT_4048 0.55 -0.7 18,851 - EX28DRAFT_4048 0.55 -2.3 18,851 - EX28DRAFT_4048 0.55 -1.4 18,851 - EX28DRAFT_4048 0.55 -2.9 18,880 + EX28DRAFT_4048 0.56 -0.2 19,125 - EX28DRAFT_4048 0.68 +1.2 19,275 + EX28DRAFT_4048 0.76 +0.2 19,339 - EX28DRAFT_4048 0.79 +0.1 19,339 - EX28DRAFT_4048 0.79 -0.2 19,344 - EX28DRAFT_4048 0.79 -0.3 19,605 + +1.1 19,606 - +0.0 19,841 + -1.0 19,842 - -0.5 19,883 - +9.7 19,917 + +0.2 19,917 + -1.8 19,945 + +0.3 19,945 + +2.4 19,994 - +0.3 19,996 + +0.0 20,237 + EX28DRAFT_4049 0.25 -0.7 20,238 - EX28DRAFT_4049 0.25 -0.8 20,436 + EX28DRAFT_4049 0.40 -0.2 20,437 - EX28DRAFT_4049 0.40 +0.3 20,442 + EX28DRAFT_4049 0.41 -0.3 20,443 - EX28DRAFT_4049 0.41 -0.5 20,488 - EX28DRAFT_4049 0.44 -0.2 20,535 + EX28DRAFT_4049 0.48 +2.5 20,544 + EX28DRAFT_4049 0.49 -0.6 20,544 + EX28DRAFT_4049 0.49 -0.4 20,544 + EX28DRAFT_4049 0.49 +0.5 20,545 - EX28DRAFT_4049 0.49 +1.2 20,545 - EX28DRAFT_4049 0.49 -0.9 20,548 + EX28DRAFT_4049 0.49 +0.9 20,548 + EX28DRAFT_4049 0.49 +0.6 20,587 - EX28DRAFT_4049 0.52 -0.3 20,596 + EX28DRAFT_4049 0.53 +0.4 20,596 + EX28DRAFT_4049 0.53 -4.0 20,596 + EX28DRAFT_4049 0.53 +0.8 20,596 + EX28DRAFT_4049 0.53 +1.3 20,596 + EX28DRAFT_4049 0.53 -0.4 20,596 + EX28DRAFT_4049 0.53 +0.3 20,597 - EX28DRAFT_4049 0.53 +0.5 20,598 + EX28DRAFT_4049 0.53 -1.2 20,599 - EX28DRAFT_4049 0.53 -1.3 20,680 + EX28DRAFT_4049 0.59 +2.2 20,743 - EX28DRAFT_4049 0.64 -0.9
Or see this region's nucleotide sequence