Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4018 and EX28DRAFT_4019 are separated by 90 nucleotides EX28DRAFT_4019 and EX28DRAFT_4020 are separated by 151 nucleotides EX28DRAFT_4020 and EX28DRAFT_4021 are separated by 0 nucleotides
EX28DRAFT_4018: EX28DRAFT_4018 - Flavodoxins, at 228,679 to 229,128
_4018
EX28DRAFT_4019: EX28DRAFT_4019 - Transcriptional regulators, at 229,219 to 229,677
_4019
EX28DRAFT_4020: EX28DRAFT_4020 - aspartate-ammonia ligase (EC 6.3.1.1), at 229,829 to 230,821
_4020
EX28DRAFT_4021: EX28DRAFT_4021 - Uncharacterized protein containing a von Willebrand factor type A (vWA) domain, at 230,822 to 232,273
_4021
Position (kb) 229
230
231 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 228.920 kb on + strand, within EX28DRAFT_4018 at 228.921 kb on - strand, within EX28DRAFT_4018 at 228.922 kb on + strand, within EX28DRAFT_4018 at 228.922 kb on + strand, within EX28DRAFT_4018 at 229.145 kb on + strand at 229.163 kb on - strand at 229.163 kb on - strand at 229.163 kb on - strand at 229.163 kb on - strand at 229.163 kb on - strand at 229.234 kb on - strand at 229.308 kb on + strand, within EX28DRAFT_4019 at 229.308 kb on + strand, within EX28DRAFT_4019 at 229.308 kb on + strand, within EX28DRAFT_4019 at 229.308 kb on + strand, within EX28DRAFT_4019 at 229.308 kb on + strand, within EX28DRAFT_4019 at 229.308 kb on + strand, within EX28DRAFT_4019 at 229.309 kb on - strand, within EX28DRAFT_4019 at 229.309 kb on - strand, within EX28DRAFT_4019 at 229.312 kb on + strand, within EX28DRAFT_4019 at 229.312 kb on + strand, within EX28DRAFT_4019 at 229.313 kb on - strand, within EX28DRAFT_4019 at 229.313 kb on - strand, within EX28DRAFT_4019 at 229.351 kb on - strand, within EX28DRAFT_4019 at 229.354 kb on - strand, within EX28DRAFT_4019 at 229.380 kb on - strand, within EX28DRAFT_4019 at 229.380 kb on - strand, within EX28DRAFT_4019 at 229.383 kb on - strand, within EX28DRAFT_4019 at 229.803 kb on - strand at 229.823 kb on + strand at 229.823 kb on + strand at 229.823 kb on + strand at 229.823 kb on + strand at 229.824 kb on - strand at 229.824 kb on - strand at 229.827 kb on + strand at 229.827 kb on + strand at 229.827 kb on + strand at 229.842 kb on - strand at 229.842 kb on - strand at 229.873 kb on - strand at 229.966 kb on + strand, within EX28DRAFT_4020 at 229.967 kb on - strand, within EX28DRAFT_4020 at 230.105 kb on + strand, within EX28DRAFT_4020 at 230.166 kb on - strand, within EX28DRAFT_4020 at 230.406 kb on + strand, within EX28DRAFT_4020 at 230.416 kb on - strand, within EX28DRAFT_4020 at 230.416 kb on - strand, within EX28DRAFT_4020 at 230.416 kb on - strand, within EX28DRAFT_4020 at 230.424 kb on + strand, within EX28DRAFT_4020 at 230.424 kb on + strand, within EX28DRAFT_4020 at 230.428 kb on + strand, within EX28DRAFT_4020 at 230.428 kb on + strand, within EX28DRAFT_4020 at 230.480 kb on + strand, within EX28DRAFT_4020 at 230.481 kb on - strand, within EX28DRAFT_4020 at 230.481 kb on - strand, within EX28DRAFT_4020 at 230.749 kb on - strand at 230.793 kb on + strand at 230.819 kb on + strand at 230.878 kb on + strand at 230.879 kb on - strand at 230.879 kb on - strand at 231.058 kb on + strand, within EX28DRAFT_4021 at 231.059 kb on - strand, within EX28DRAFT_4021 at 231.165 kb on + strand, within EX28DRAFT_4021 at 231.194 kb on - strand, within EX28DRAFT_4021 at 231.292 kb on + strand, within EX28DRAFT_4021 at 231.439 kb on - strand, within EX28DRAFT_4021 at 231.669 kb on + strand, within EX28DRAFT_4021 at 231.787 kb on + strand, within EX28DRAFT_4021 at 231.788 kb on - strand, within EX28DRAFT_4021 at 231.788 kb on - strand, within EX28DRAFT_4021
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 228,920 + EX28DRAFT_4018 0.54 +0.2 228,921 - EX28DRAFT_4018 0.54 -0.2 228,922 + EX28DRAFT_4018 0.54 -0.8 228,922 + EX28DRAFT_4018 0.54 -0.8 229,145 + -0.6 229,163 - -1.0 229,163 - -0.8 229,163 - +0.7 229,163 - +0.6 229,163 - +0.8 229,234 - +0.5 229,308 + EX28DRAFT_4019 0.19 -1.1 229,308 + EX28DRAFT_4019 0.19 +1.2 229,308 + EX28DRAFT_4019 0.19 -2.8 229,308 + EX28DRAFT_4019 0.19 +0.3 229,308 + EX28DRAFT_4019 0.19 +0.0 229,308 + EX28DRAFT_4019 0.19 -1.4 229,309 - EX28DRAFT_4019 0.20 +0.2 229,309 - EX28DRAFT_4019 0.20 -1.8 229,312 + EX28DRAFT_4019 0.20 +1.5 229,312 + EX28DRAFT_4019 0.20 +0.5 229,313 - EX28DRAFT_4019 0.20 +0.2 229,313 - EX28DRAFT_4019 0.20 +1.1 229,351 - EX28DRAFT_4019 0.29 +6.0 229,354 - EX28DRAFT_4019 0.29 +0.7 229,380 - EX28DRAFT_4019 0.35 +1.3 229,380 - EX28DRAFT_4019 0.35 -2.2 229,383 - EX28DRAFT_4019 0.36 -0.2 229,803 - -0.5 229,823 + -1.2 229,823 + -0.3 229,823 + +0.2 229,823 + +0.4 229,824 - -0.6 229,824 - -0.0 229,827 + -1.0 229,827 + -0.8 229,827 + -0.4 229,842 - +1.2 229,842 - -1.5 229,873 - +1.1 229,966 + EX28DRAFT_4020 0.14 +0.9 229,967 - EX28DRAFT_4020 0.14 +0.9 230,105 + EX28DRAFT_4020 0.28 +1.3 230,166 - EX28DRAFT_4020 0.34 -3.3 230,406 + EX28DRAFT_4020 0.58 +1.4 230,416 - EX28DRAFT_4020 0.59 +1.5 230,416 - EX28DRAFT_4020 0.59 -1.1 230,416 - EX28DRAFT_4020 0.59 -3.0 230,424 + EX28DRAFT_4020 0.60 +1.1 230,424 + EX28DRAFT_4020 0.60 -0.4 230,428 + EX28DRAFT_4020 0.60 -1.3 230,428 + EX28DRAFT_4020 0.60 -0.5 230,480 + EX28DRAFT_4020 0.66 +1.6 230,481 - EX28DRAFT_4020 0.66 +0.4 230,481 - EX28DRAFT_4020 0.66 -2.8 230,749 - +0.7 230,793 + +0.7 230,819 + -0.1 230,878 + -1.3 230,879 - -1.1 230,879 - -0.6 231,058 + EX28DRAFT_4021 0.16 -1.6 231,059 - EX28DRAFT_4021 0.16 -0.4 231,165 + EX28DRAFT_4021 0.24 -0.5 231,194 - EX28DRAFT_4021 0.26 -0.5 231,292 + EX28DRAFT_4021 0.32 +0.6 231,439 - EX28DRAFT_4021 0.42 +0.3 231,669 + EX28DRAFT_4021 0.58 +0.9 231,787 + EX28DRAFT_4021 0.66 -0.3 231,788 - EX28DRAFT_4021 0.67 -4.5 231,788 - EX28DRAFT_4021 0.67 -0.4
Or see this region's nucleotide sequence