Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3961

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3958 and EX28DRAFT_3959 are separated by 27 nucleotidesEX28DRAFT_3959 and EX28DRAFT_3960 are separated by 46 nucleotidesEX28DRAFT_3960 and EX28DRAFT_3961 are separated by 62 nucleotidesEX28DRAFT_3961 and EX28DRAFT_3962 are separated by 202 nucleotides EX28DRAFT_3958: EX28DRAFT_3958 - hypothetical protein, at 167,877 to 168,032 _3958 EX28DRAFT_3959: EX28DRAFT_3959 - hypothetical protein, at 168,060 to 168,242 _3959 EX28DRAFT_3960: EX28DRAFT_3960 - Acetyltransferase (GNAT) domain, at 168,289 to 168,735 _3960 EX28DRAFT_3961: EX28DRAFT_3961 - EamA-like transporter family, at 168,798 to 169,631 _3961 EX28DRAFT_3962: EX28DRAFT_3962 - Multidrug resistance protein, at 169,834 to 170,991 _3962 Position (kb) 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 167.883 kb on - strandat 167.940 kb on + strand, within EX28DRAFT_3958at 167.940 kb on + strand, within EX28DRAFT_3958at 168.056 kb on + strandat 168.056 kb on + strandat 168.134 kb on + strand, within EX28DRAFT_3959at 168.157 kb on + strand, within EX28DRAFT_3959at 168.157 kb on + strand, within EX28DRAFT_3959at 168.158 kb on - strand, within EX28DRAFT_3959at 168.158 kb on - strand, within EX28DRAFT_3959at 168.158 kb on - strand, within EX28DRAFT_3959at 168.158 kb on - strand, within EX28DRAFT_3959at 168.222 kb on + strand, within EX28DRAFT_3959at 168.272 kb on - strandat 168.289 kb on - strandat 168.289 kb on - strandat 168.289 kb on - strandat 168.303 kb on - strandat 168.334 kb on + strand, within EX28DRAFT_3960at 168.334 kb on + strand, within EX28DRAFT_3960at 168.358 kb on - strand, within EX28DRAFT_3960at 168.423 kb on + strand, within EX28DRAFT_3960at 168.528 kb on + strand, within EX28DRAFT_3960at 168.541 kb on + strand, within EX28DRAFT_3960at 168.664 kb on + strand, within EX28DRAFT_3960at 168.681 kb on + strand, within EX28DRAFT_3960at 168.824 kb on - strandat 168.824 kb on - strandat 168.889 kb on - strand, within EX28DRAFT_3961at 168.937 kb on + strand, within EX28DRAFT_3961at 168.938 kb on - strand, within EX28DRAFT_3961at 168.938 kb on - strand, within EX28DRAFT_3961at 169.000 kb on + strand, within EX28DRAFT_3961at 169.000 kb on + strand, within EX28DRAFT_3961at 169.001 kb on - strand, within EX28DRAFT_3961at 169.011 kb on + strand, within EX28DRAFT_3961at 169.011 kb on + strand, within EX28DRAFT_3961at 169.011 kb on + strand, within EX28DRAFT_3961at 169.012 kb on - strand, within EX28DRAFT_3961at 169.035 kb on + strand, within EX28DRAFT_3961at 169.036 kb on - strand, within EX28DRAFT_3961at 169.036 kb on - strand, within EX28DRAFT_3961at 169.049 kb on + strand, within EX28DRAFT_3961at 169.205 kb on - strand, within EX28DRAFT_3961at 169.205 kb on - strand, within EX28DRAFT_3961at 169.250 kb on + strand, within EX28DRAFT_3961at 169.263 kb on - strand, within EX28DRAFT_3961at 169.312 kb on - strand, within EX28DRAFT_3961at 169.313 kb on + strand, within EX28DRAFT_3961at 169.313 kb on + strand, within EX28DRAFT_3961at 169.314 kb on - strand, within EX28DRAFT_3961at 169.332 kb on - strand, within EX28DRAFT_3961at 169.645 kb on + strandat 169.646 kb on + strandat 169.647 kb on - strandat 169.647 kb on - strandat 169.647 kb on - strandat 169.832 kb on + strandat 169.833 kb on - strandat 169.886 kb on - strandat 169.961 kb on - strand, within EX28DRAFT_3962at 169.972 kb on + strand, within EX28DRAFT_3962at 170.176 kb on - strand, within EX28DRAFT_3962at 170.179 kb on + strand, within EX28DRAFT_3962at 170.180 kb on - strand, within EX28DRAFT_3962at 170.404 kb on + strand, within EX28DRAFT_3962at 170.405 kb on - strand, within EX28DRAFT_3962at 170.406 kb on + strand, within EX28DRAFT_3962at 170.544 kb on + strand, within EX28DRAFT_3962

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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167,883 - +0.7
167,940 + EX28DRAFT_3958 0.40 +2.0
167,940 + EX28DRAFT_3958 0.40 -1.7
168,056 + -1.4
168,056 + +0.6
168,134 + EX28DRAFT_3959 0.40 +0.5
168,157 + EX28DRAFT_3959 0.53 +0.6
168,157 + EX28DRAFT_3959 0.53 -0.3
168,158 - EX28DRAFT_3959 0.54 -2.1
168,158 - EX28DRAFT_3959 0.54 -2.6
168,158 - EX28DRAFT_3959 0.54 -1.0
168,158 - EX28DRAFT_3959 0.54 +0.2
168,222 + EX28DRAFT_3959 0.89 +1.4
168,272 - +0.7
168,289 - -0.8
168,289 - +0.7
168,289 - -0.0
168,303 - -3.3
168,334 + EX28DRAFT_3960 0.10 -0.5
168,334 + EX28DRAFT_3960 0.10 +0.0
168,358 - EX28DRAFT_3960 0.15 +0.3
168,423 + EX28DRAFT_3960 0.30 +0.1
168,528 + EX28DRAFT_3960 0.53 +0.4
168,541 + EX28DRAFT_3960 0.56 -1.1
168,664 + EX28DRAFT_3960 0.84 +0.2
168,681 + EX28DRAFT_3960 0.88 -3.4
168,824 - +0.8
168,824 - +0.8
168,889 - EX28DRAFT_3961 0.11 +1.2
168,937 + EX28DRAFT_3961 0.17 +0.4
168,938 - EX28DRAFT_3961 0.17 -2.4
168,938 - EX28DRAFT_3961 0.17 +0.4
169,000 + EX28DRAFT_3961 0.24 +0.9
169,000 + EX28DRAFT_3961 0.24 +0.8
169,001 - EX28DRAFT_3961 0.24 +0.4
169,011 + EX28DRAFT_3961 0.26 -0.3
169,011 + EX28DRAFT_3961 0.26 +1.2
169,011 + EX28DRAFT_3961 0.26 +0.6
169,012 - EX28DRAFT_3961 0.26 +0.3
169,035 + EX28DRAFT_3961 0.28 +0.5
169,036 - EX28DRAFT_3961 0.29 +0.2
169,036 - EX28DRAFT_3961 0.29 -0.2
169,049 + EX28DRAFT_3961 0.30 +2.4
169,205 - EX28DRAFT_3961 0.49 +0.8
169,205 - EX28DRAFT_3961 0.49 +0.3
169,250 + EX28DRAFT_3961 0.54 +1.5
169,263 - EX28DRAFT_3961 0.56 +1.1
169,312 - EX28DRAFT_3961 0.62 -2.1
169,313 + EX28DRAFT_3961 0.62 +2.8
169,313 + EX28DRAFT_3961 0.62 -3.2
169,314 - EX28DRAFT_3961 0.62 +1.8
169,332 - EX28DRAFT_3961 0.64 +1.6
169,645 + +0.1
169,646 + -0.0
169,647 - +0.3
169,647 - +1.0
169,647 - +0.6
169,832 + -0.4
169,833 - +0.0
169,886 - -1.8
169,961 - EX28DRAFT_3962 0.11 -0.2
169,972 + EX28DRAFT_3962 0.12 +0.4
170,176 - EX28DRAFT_3962 0.30 +0.3
170,179 + EX28DRAFT_3962 0.30 -1.5
170,180 - EX28DRAFT_3962 0.30 -0.4
170,404 + EX28DRAFT_3962 0.49 +0.9
170,405 - EX28DRAFT_3962 0.49 -0.2
170,406 + EX28DRAFT_3962 0.49 -0.7
170,544 + EX28DRAFT_3962 0.61 -0.2

Or see this region's nucleotide sequence