Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3944

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3943 and EX28DRAFT_3944 are separated by 48 nucleotidesEX28DRAFT_3944 and EX28DRAFT_3945 are separated by 102 nucleotidesEX28DRAFT_3945 and EX28DRAFT_3946 are separated by 233 nucleotides EX28DRAFT_3943: EX28DRAFT_3943 - Predicted permease, DMT superfamily, at 153,273 to 154,178 _3943 EX28DRAFT_3944: EX28DRAFT_3944 - Arabinose efflux permease, at 154,227 to 155,417 _3944 EX28DRAFT_3945: EX28DRAFT_3945 - Protein of unknown function (DUF1198), at 155,520 to 155,972 _3945 EX28DRAFT_3946: EX28DRAFT_3946 - hypothetical protein, at 156,206 to 156,661 _3946 Position (kb) 154 155 156Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 153.231 kb on + strandat 153.231 kb on + strandat 153.231 kb on + strandat 153.232 kb on - strandat 153.232 kb on - strandat 153.232 kb on - strandat 153.351 kb on + strandat 153.351 kb on + strandat 153.352 kb on - strandat 153.352 kb on - strandat 153.786 kb on + strand, within EX28DRAFT_3943at 153.795 kb on + strand, within EX28DRAFT_3943at 153.796 kb on - strand, within EX28DRAFT_3943at 153.796 kb on - strand, within EX28DRAFT_3943at 153.939 kb on + strand, within EX28DRAFT_3943at 153.940 kb on - strand, within EX28DRAFT_3943at 153.978 kb on + strand, within EX28DRAFT_3943at 153.978 kb on + strand, within EX28DRAFT_3943at 154.228 kb on + strandat 154.472 kb on + strand, within EX28DRAFT_3944at 154.473 kb on - strand, within EX28DRAFT_3944at 154.499 kb on + strand, within EX28DRAFT_3944at 154.608 kb on - strand, within EX28DRAFT_3944at 154.682 kb on + strand, within EX28DRAFT_3944at 154.683 kb on - strand, within EX28DRAFT_3944at 154.699 kb on + strand, within EX28DRAFT_3944at 154.700 kb on - strand, within EX28DRAFT_3944at 154.700 kb on - strand, within EX28DRAFT_3944at 154.704 kb on - strand, within EX28DRAFT_3944at 154.733 kb on + strand, within EX28DRAFT_3944at 154.733 kb on + strand, within EX28DRAFT_3944at 154.733 kb on + strand, within EX28DRAFT_3944at 154.733 kb on + strand, within EX28DRAFT_3944at 154.733 kb on + strand, within EX28DRAFT_3944at 154.734 kb on - strand, within EX28DRAFT_3944at 154.734 kb on - strand, within EX28DRAFT_3944at 154.796 kb on + strand, within EX28DRAFT_3944at 155.145 kb on + strand, within EX28DRAFT_3944at 155.145 kb on + strand, within EX28DRAFT_3944at 155.146 kb on - strand, within EX28DRAFT_3944at 155.405 kb on + strandat 155.405 kb on + strandat 155.406 kb on - strandat 155.406 kb on - strandat 155.462 kb on - strandat 155.531 kb on - strandat 155.618 kb on + strand, within EX28DRAFT_3945at 155.676 kb on - strand, within EX28DRAFT_3945at 155.696 kb on + strand, within EX28DRAFT_3945at 155.696 kb on + strand, within EX28DRAFT_3945at 155.696 kb on + strand, within EX28DRAFT_3945at 155.696 kb on + strand, within EX28DRAFT_3945at 155.697 kb on - strand, within EX28DRAFT_3945at 155.697 kb on - strand, within EX28DRAFT_3945at 155.697 kb on - strand, within EX28DRAFT_3945at 155.697 kb on - strand, within EX28DRAFT_3945at 155.697 kb on - strand, within EX28DRAFT_3945at 156.039 kb on + strandat 156.040 kb on - strandat 156.042 kb on + strandat 156.043 kb on - strandat 156.110 kb on - strandat 156.110 kb on - strandat 156.169 kb on + strandat 156.187 kb on - strandat 156.222 kb on + strandat 156.223 kb on - strandat 156.238 kb on - strandat 156.266 kb on + strand, within EX28DRAFT_3946at 156.267 kb on - strand, within EX28DRAFT_3946at 156.290 kb on + strand, within EX28DRAFT_3946at 156.310 kb on + strand, within EX28DRAFT_3946at 156.315 kb on - strand, within EX28DRAFT_3946at 156.315 kb on - strand, within EX28DRAFT_3946at 156.336 kb on - strand, within EX28DRAFT_3946

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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153,231 + +1.1
153,231 + +0.7
153,231 + -1.2
153,232 - +1.0
153,232 - -0.5
153,232 - -0.2
153,351 + +2.7
153,351 + -3.5
153,352 - +0.8
153,352 - -0.7
153,786 + EX28DRAFT_3943 0.57 +1.3
153,795 + EX28DRAFT_3943 0.58 +0.8
153,796 - EX28DRAFT_3943 0.58 -0.6
153,796 - EX28DRAFT_3943 0.58 +0.7
153,939 + EX28DRAFT_3943 0.74 +0.1
153,940 - EX28DRAFT_3943 0.74 +0.9
153,978 + EX28DRAFT_3943 0.78 +0.2
153,978 + EX28DRAFT_3943 0.78 +0.7
154,228 + -0.3
154,472 + EX28DRAFT_3944 0.21 -1.1
154,473 - EX28DRAFT_3944 0.21 -1.6
154,499 + EX28DRAFT_3944 0.23 -0.7
154,608 - EX28DRAFT_3944 0.32 -0.7
154,682 + EX28DRAFT_3944 0.38 +0.6
154,683 - EX28DRAFT_3944 0.38 +1.2
154,699 + EX28DRAFT_3944 0.40 +1.6
154,700 - EX28DRAFT_3944 0.40 +0.8
154,700 - EX28DRAFT_3944 0.40 -0.1
154,704 - EX28DRAFT_3944 0.40 +0.8
154,733 + EX28DRAFT_3944 0.42 -0.8
154,733 + EX28DRAFT_3944 0.42 +0.3
154,733 + EX28DRAFT_3944 0.42 -1.2
154,733 + EX28DRAFT_3944 0.42 +0.2
154,733 + EX28DRAFT_3944 0.42 -1.5
154,734 - EX28DRAFT_3944 0.43 -0.6
154,734 - EX28DRAFT_3944 0.43 +0.3
154,796 + EX28DRAFT_3944 0.48 +0.1
155,145 + EX28DRAFT_3944 0.77 -0.6
155,145 + EX28DRAFT_3944 0.77 -1.7
155,146 - EX28DRAFT_3944 0.77 -0.1
155,405 + -1.4
155,405 + -1.8
155,406 - +0.7
155,406 - -0.2
155,462 - -0.5
155,531 - +0.8
155,618 + EX28DRAFT_3945 0.22 +0.7
155,676 - EX28DRAFT_3945 0.34 -1.8
155,696 + EX28DRAFT_3945 0.39 -0.4
155,696 + EX28DRAFT_3945 0.39 +3.1
155,696 + EX28DRAFT_3945 0.39 -0.7
155,696 + EX28DRAFT_3945 0.39 -2.5
155,697 - EX28DRAFT_3945 0.39 +0.8
155,697 - EX28DRAFT_3945 0.39 +0.7
155,697 - EX28DRAFT_3945 0.39 -0.4
155,697 - EX28DRAFT_3945 0.39 +2.2
155,697 - EX28DRAFT_3945 0.39 -1.6
156,039 + +1.0
156,040 - -0.2
156,042 + -1.6
156,043 - +0.3
156,110 - -0.8
156,110 - -1.8
156,169 + -0.3
156,187 - +1.0
156,222 + -0.6
156,223 - +1.2
156,238 - +1.6
156,266 + EX28DRAFT_3946 0.13 +0.5
156,267 - EX28DRAFT_3946 0.13 +1.4
156,290 + EX28DRAFT_3946 0.18 -0.6
156,310 + EX28DRAFT_3946 0.23 +0.8
156,315 - EX28DRAFT_3946 0.24 -0.3
156,315 - EX28DRAFT_3946 0.24 -0.6
156,336 - EX28DRAFT_3946 0.29 +2.2

Or see this region's nucleotide sequence