Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3942 and EX28DRAFT_3943 are separated by 147 nucleotides EX28DRAFT_3943 and EX28DRAFT_3944 are separated by 48 nucleotides
EX28DRAFT_3942: EX28DRAFT_3942 - Maltoporin (phage lambda and maltose receptor), at 151,746 to 153,125
_3942
EX28DRAFT_3943: EX28DRAFT_3943 - Predicted permease, DMT superfamily, at 153,273 to 154,178
_3943
EX28DRAFT_3944: EX28DRAFT_3944 - Arabinose efflux permease, at 154,227 to 155,417
_3944
Position (kb) 153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 152.494 kb on - strand, within EX28DRAFT_3942 at 152.551 kb on - strand, within EX28DRAFT_3942 at 152.559 kb on + strand, within EX28DRAFT_3942 at 152.671 kb on - strand, within EX28DRAFT_3942 at 152.727 kb on + strand, within EX28DRAFT_3942 at 152.727 kb on + strand, within EX28DRAFT_3942 at 152.749 kb on - strand, within EX28DRAFT_3942 at 152.778 kb on + strand, within EX28DRAFT_3942 at 152.779 kb on - strand, within EX28DRAFT_3942 at 152.838 kb on + strand, within EX28DRAFT_3942 at 152.839 kb on - strand, within EX28DRAFT_3942 at 152.919 kb on + strand, within EX28DRAFT_3942 at 152.969 kb on + strand, within EX28DRAFT_3942 at 152.970 kb on - strand, within EX28DRAFT_3942 at 153.015 kb on + strand at 153.015 kb on + strand at 153.123 kb on + strand at 153.231 kb on + strand at 153.231 kb on + strand at 153.231 kb on + strand at 153.232 kb on - strand at 153.232 kb on - strand at 153.232 kb on - strand at 153.351 kb on + strand at 153.351 kb on + strand at 153.352 kb on - strand at 153.352 kb on - strand at 153.786 kb on + strand, within EX28DRAFT_3943 at 153.795 kb on + strand, within EX28DRAFT_3943 at 153.796 kb on - strand, within EX28DRAFT_3943 at 153.796 kb on - strand, within EX28DRAFT_3943 at 153.939 kb on + strand, within EX28DRAFT_3943 at 153.940 kb on - strand, within EX28DRAFT_3943 at 153.978 kb on + strand, within EX28DRAFT_3943 at 153.978 kb on + strand, within EX28DRAFT_3943 at 154.228 kb on + strand at 154.472 kb on + strand, within EX28DRAFT_3944 at 154.473 kb on - strand, within EX28DRAFT_3944 at 154.499 kb on + strand, within EX28DRAFT_3944 at 154.608 kb on - strand, within EX28DRAFT_3944 at 154.682 kb on + strand, within EX28DRAFT_3944 at 154.683 kb on - strand, within EX28DRAFT_3944 at 154.699 kb on + strand, within EX28DRAFT_3944 at 154.700 kb on - strand, within EX28DRAFT_3944 at 154.700 kb on - strand, within EX28DRAFT_3944 at 154.704 kb on - strand, within EX28DRAFT_3944 at 154.733 kb on + strand, within EX28DRAFT_3944 at 154.733 kb on + strand, within EX28DRAFT_3944 at 154.733 kb on + strand, within EX28DRAFT_3944 at 154.733 kb on + strand, within EX28DRAFT_3944 at 154.733 kb on + strand, within EX28DRAFT_3944 at 154.734 kb on - strand, within EX28DRAFT_3944 at 154.734 kb on - strand, within EX28DRAFT_3944 at 154.796 kb on + strand, within EX28DRAFT_3944 at 155.145 kb on + strand, within EX28DRAFT_3944 at 155.145 kb on + strand, within EX28DRAFT_3944 at 155.146 kb on - strand, within EX28DRAFT_3944
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 152,494 - EX28DRAFT_3942 0.54 -0.1 152,551 - EX28DRAFT_3942 0.58 +2.3 152,559 + EX28DRAFT_3942 0.59 +1.1 152,671 - EX28DRAFT_3942 0.67 +0.4 152,727 + EX28DRAFT_3942 0.71 -0.9 152,727 + EX28DRAFT_3942 0.71 +0.7 152,749 - EX28DRAFT_3942 0.73 +1.2 152,778 + EX28DRAFT_3942 0.75 -1.9 152,779 - EX28DRAFT_3942 0.75 +1.9 152,838 + EX28DRAFT_3942 0.79 -1.4 152,839 - EX28DRAFT_3942 0.79 -0.3 152,919 + EX28DRAFT_3942 0.85 +0.8 152,969 + EX28DRAFT_3942 0.89 +1.9 152,970 - EX28DRAFT_3942 0.89 -0.0 153,015 + +0.1 153,015 + -0.6 153,123 + -1.8 153,231 + +1.1 153,231 + +0.7 153,231 + -1.2 153,232 - +1.0 153,232 - -0.5 153,232 - -0.2 153,351 + +2.7 153,351 + -3.5 153,352 - +0.8 153,352 - -0.7 153,786 + EX28DRAFT_3943 0.57 +1.3 153,795 + EX28DRAFT_3943 0.58 +0.8 153,796 - EX28DRAFT_3943 0.58 -0.6 153,796 - EX28DRAFT_3943 0.58 +0.7 153,939 + EX28DRAFT_3943 0.74 +0.1 153,940 - EX28DRAFT_3943 0.74 +0.9 153,978 + EX28DRAFT_3943 0.78 +0.2 153,978 + EX28DRAFT_3943 0.78 +0.7 154,228 + -0.3 154,472 + EX28DRAFT_3944 0.21 -1.1 154,473 - EX28DRAFT_3944 0.21 -1.6 154,499 + EX28DRAFT_3944 0.23 -0.7 154,608 - EX28DRAFT_3944 0.32 -0.7 154,682 + EX28DRAFT_3944 0.38 +0.6 154,683 - EX28DRAFT_3944 0.38 +1.2 154,699 + EX28DRAFT_3944 0.40 +1.6 154,700 - EX28DRAFT_3944 0.40 +0.8 154,700 - EX28DRAFT_3944 0.40 -0.1 154,704 - EX28DRAFT_3944 0.40 +0.8 154,733 + EX28DRAFT_3944 0.42 -0.8 154,733 + EX28DRAFT_3944 0.42 +0.3 154,733 + EX28DRAFT_3944 0.42 -1.2 154,733 + EX28DRAFT_3944 0.42 +0.2 154,733 + EX28DRAFT_3944 0.42 -1.5 154,734 - EX28DRAFT_3944 0.43 -0.6 154,734 - EX28DRAFT_3944 0.43 +0.3 154,796 + EX28DRAFT_3944 0.48 +0.1 155,145 + EX28DRAFT_3944 0.77 -0.6 155,145 + EX28DRAFT_3944 0.77 -1.7 155,146 - EX28DRAFT_3944 0.77 -0.1
Or see this region's nucleotide sequence