Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3849

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3848 and EX28DRAFT_3849 are separated by 659 nucleotidesEX28DRAFT_3849 and EX28DRAFT_3850 are separated by 100 nucleotides EX28DRAFT_3848: EX28DRAFT_3848 - Protein of unknown function (DUF3302), at 57,068 to 57,424 _3848 EX28DRAFT_3849: EX28DRAFT_3849 - PTS system, mannitol-specific IIC component, at 58,084 to 59,991 _3849 EX28DRAFT_3850: EX28DRAFT_3850 - Mannitol-1-phosphate/altronate dehydrogenases, at 60,092 to 61,240 _3850 Position (kb) 58 59 60Strain fitness (log2 ratio) -2 -1 0 1at 57.125 kb on + strand, within EX28DRAFT_3848at 57.219 kb on + strand, within EX28DRAFT_3848at 57.275 kb on - strand, within EX28DRAFT_3848at 57.334 kb on + strand, within EX28DRAFT_3848at 57.336 kb on + strand, within EX28DRAFT_3848at 57.602 kb on - strandat 57.616 kb on + strandat 57.625 kb on - strandat 57.756 kb on + strandat 58.252 kb on - strandat 58.444 kb on - strand, within EX28DRAFT_3849at 59.076 kb on + strand, within EX28DRAFT_3849at 59.332 kb on - strand, within EX28DRAFT_3849

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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57,125 + EX28DRAFT_3848 0.16 -0.4
57,219 + EX28DRAFT_3848 0.42 -0.1
57,275 - EX28DRAFT_3848 0.58 +0.4
57,334 + EX28DRAFT_3848 0.75 +0.6
57,336 + EX28DRAFT_3848 0.75 +0.4
57,602 - -0.5
57,616 + -0.1
57,625 - -2.2
57,756 + +1.4
58,252 - +0.7
58,444 - EX28DRAFT_3849 0.19 -0.5
59,076 + EX28DRAFT_3849 0.52 -1.0
59,332 - EX28DRAFT_3849 0.65 -2.5

Or see this region's nucleotide sequence