Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3848

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3847 and EX28DRAFT_3848 are separated by 2 nucleotidesEX28DRAFT_3848 and EX28DRAFT_3849 are separated by 659 nucleotides EX28DRAFT_3847: EX28DRAFT_3847 - Multidrug resistance efflux pump, at 55,929 to 57,065 _3847 EX28DRAFT_3848: EX28DRAFT_3848 - Protein of unknown function (DUF3302), at 57,068 to 57,424 _3848 EX28DRAFT_3849: EX28DRAFT_3849 - PTS system, mannitol-specific IIC component, at 58,084 to 59,991 _3849 Position (kb) 57 58Strain fitness (log2 ratio) -2 -1 0 1 2at 56.310 kb on - strand, within EX28DRAFT_3847at 56.348 kb on - strand, within EX28DRAFT_3847at 56.380 kb on + strand, within EX28DRAFT_3847at 56.380 kb on + strand, within EX28DRAFT_3847at 56.380 kb on + strand, within EX28DRAFT_3847at 56.381 kb on - strand, within EX28DRAFT_3847at 56.422 kb on + strand, within EX28DRAFT_3847at 56.483 kb on + strand, within EX28DRAFT_3847at 56.483 kb on + strand, within EX28DRAFT_3847at 56.484 kb on - strand, within EX28DRAFT_3847at 56.484 kb on - strand, within EX28DRAFT_3847at 56.533 kb on - strand, within EX28DRAFT_3847at 56.554 kb on + strand, within EX28DRAFT_3847at 56.554 kb on + strand, within EX28DRAFT_3847at 56.555 kb on - strand, within EX28DRAFT_3847at 56.599 kb on - strand, within EX28DRAFT_3847at 56.632 kb on + strand, within EX28DRAFT_3847at 56.633 kb on - strand, within EX28DRAFT_3847at 56.640 kb on - strand, within EX28DRAFT_3847at 56.641 kb on + strand, within EX28DRAFT_3847at 56.642 kb on - strand, within EX28DRAFT_3847at 56.793 kb on + strand, within EX28DRAFT_3847at 56.814 kb on - strand, within EX28DRAFT_3847at 56.828 kb on + strand, within EX28DRAFT_3847at 56.879 kb on - strand, within EX28DRAFT_3847at 56.920 kb on + strand, within EX28DRAFT_3847at 56.920 kb on + strand, within EX28DRAFT_3847at 56.921 kb on - strand, within EX28DRAFT_3847at 57.040 kb on + strandat 57.040 kb on + strandat 57.125 kb on + strand, within EX28DRAFT_3848at 57.219 kb on + strand, within EX28DRAFT_3848at 57.275 kb on - strand, within EX28DRAFT_3848at 57.334 kb on + strand, within EX28DRAFT_3848at 57.336 kb on + strand, within EX28DRAFT_3848at 57.602 kb on - strandat 57.616 kb on + strandat 57.625 kb on - strandat 57.756 kb on + strandat 58.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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56,310 - EX28DRAFT_3847 0.34 -0.4
56,348 - EX28DRAFT_3847 0.37 -2.5
56,380 + EX28DRAFT_3847 0.40 +0.3
56,380 + EX28DRAFT_3847 0.40 +2.6
56,380 + EX28DRAFT_3847 0.40 -1.6
56,381 - EX28DRAFT_3847 0.40 -0.2
56,422 + EX28DRAFT_3847 0.43 +0.5
56,483 + EX28DRAFT_3847 0.49 -1.7
56,483 + EX28DRAFT_3847 0.49 -2.2
56,484 - EX28DRAFT_3847 0.49 +1.5
56,484 - EX28DRAFT_3847 0.49 -0.6
56,533 - EX28DRAFT_3847 0.53 -0.3
56,554 + EX28DRAFT_3847 0.55 -0.8
56,554 + EX28DRAFT_3847 0.55 +0.3
56,555 - EX28DRAFT_3847 0.55 -0.2
56,599 - EX28DRAFT_3847 0.59 +0.4
56,632 + EX28DRAFT_3847 0.62 -2.0
56,633 - EX28DRAFT_3847 0.62 -1.9
56,640 - EX28DRAFT_3847 0.63 -0.8
56,641 + EX28DRAFT_3847 0.63 -0.3
56,642 - EX28DRAFT_3847 0.63 -0.7
56,793 + EX28DRAFT_3847 0.76 +0.2
56,814 - EX28DRAFT_3847 0.78 +0.2
56,828 + EX28DRAFT_3847 0.79 -0.1
56,879 - EX28DRAFT_3847 0.84 +0.9
56,920 + EX28DRAFT_3847 0.87 +0.4
56,920 + EX28DRAFT_3847 0.87 -1.6
56,921 - EX28DRAFT_3847 0.87 -1.6
57,040 + +0.6
57,040 + +1.2
57,125 + EX28DRAFT_3848 0.16 -0.4
57,219 + EX28DRAFT_3848 0.42 -0.1
57,275 - EX28DRAFT_3848 0.58 +0.4
57,334 + EX28DRAFT_3848 0.75 +0.6
57,336 + EX28DRAFT_3848 0.75 +0.4
57,602 - -0.5
57,616 + -0.1
57,625 - -2.2
57,756 + +1.4
58,252 - +0.7

Or see this region's nucleotide sequence