Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3841

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3840 and EX28DRAFT_3841 are separated by 395 nucleotidesEX28DRAFT_3841 and EX28DRAFT_3842 are separated by 120 nucleotides EX28DRAFT_3840: EX28DRAFT_3840 - Uncharacterized conserved protein, at 46,981 to 48,057 _3840 EX28DRAFT_3841: EX28DRAFT_3841 - Outer membrane protein V, at 48,453 to 49,193 _3841 EX28DRAFT_3842: EX28DRAFT_3842 - Transcriptional regulator, at 49,314 to 50,276 _3842 Position (kb) 48 49 50Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 47.590 kb on - strand, within EX28DRAFT_3840at 47.676 kb on + strand, within EX28DRAFT_3840at 47.685 kb on + strand, within EX28DRAFT_3840at 47.737 kb on - strand, within EX28DRAFT_3840at 47.755 kb on - strand, within EX28DRAFT_3840at 48.007 kb on - strandat 48.007 kb on - strandat 48.047 kb on + strandat 48.049 kb on + strandat 48.051 kb on + strandat 48.052 kb on - strandat 48.052 kb on - strandat 48.248 kb on + strandat 48.303 kb on - strandat 48.387 kb on - strandat 48.544 kb on + strand, within EX28DRAFT_3841at 48.565 kb on + strand, within EX28DRAFT_3841at 48.565 kb on + strand, within EX28DRAFT_3841at 48.607 kb on + strand, within EX28DRAFT_3841at 48.608 kb on - strand, within EX28DRAFT_3841at 48.608 kb on - strand, within EX28DRAFT_3841at 48.634 kb on + strand, within EX28DRAFT_3841at 48.679 kb on + strand, within EX28DRAFT_3841at 48.682 kb on + strand, within EX28DRAFT_3841at 48.683 kb on - strand, within EX28DRAFT_3841at 48.766 kb on + strand, within EX28DRAFT_3841at 48.767 kb on - strand, within EX28DRAFT_3841at 48.856 kb on + strand, within EX28DRAFT_3841at 48.857 kb on - strand, within EX28DRAFT_3841at 49.064 kb on + strand, within EX28DRAFT_3841at 49.085 kb on - strand, within EX28DRAFT_3841at 49.200 kb on + strandat 49.280 kb on - strandat 49.431 kb on + strand, within EX28DRAFT_3842at 49.431 kb on + strand, within EX28DRAFT_3842at 49.432 kb on - strand, within EX28DRAFT_3842at 49.478 kb on + strand, within EX28DRAFT_3842at 49.532 kb on + strand, within EX28DRAFT_3842at 49.583 kb on + strand, within EX28DRAFT_3842at 49.614 kb on + strand, within EX28DRAFT_3842at 49.639 kb on - strand, within EX28DRAFT_3842at 49.667 kb on - strand, within EX28DRAFT_3842at 49.766 kb on - strand, within EX28DRAFT_3842at 49.859 kb on + strand, within EX28DRAFT_3842at 49.860 kb on - strand, within EX28DRAFT_3842at 49.905 kb on - strand, within EX28DRAFT_3842at 49.998 kb on - strand, within EX28DRAFT_3842at 50.001 kb on + strand, within EX28DRAFT_3842at 50.002 kb on - strand, within EX28DRAFT_3842at 50.004 kb on - strand, within EX28DRAFT_3842at 50.016 kb on - strand, within EX28DRAFT_3842

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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47,590 - EX28DRAFT_3840 0.57 +0.7
47,676 + EX28DRAFT_3840 0.65 +0.2
47,685 + EX28DRAFT_3840 0.65 -0.0
47,737 - EX28DRAFT_3840 0.70 +0.1
47,755 - EX28DRAFT_3840 0.72 +0.0
48,007 - -0.1
48,007 - -0.3
48,047 + +0.8
48,049 + -0.8
48,051 + -0.2
48,052 - +0.1
48,052 - +0.2
48,248 + +0.5
48,303 - +0.2
48,387 - -0.3
48,544 + EX28DRAFT_3841 0.12 -0.5
48,565 + EX28DRAFT_3841 0.15 +0.8
48,565 + EX28DRAFT_3841 0.15 +0.6
48,607 + EX28DRAFT_3841 0.21 +0.4
48,608 - EX28DRAFT_3841 0.21 +0.0
48,608 - EX28DRAFT_3841 0.21 +0.7
48,634 + EX28DRAFT_3841 0.24 +0.0
48,679 + EX28DRAFT_3841 0.30 +1.1
48,682 + EX28DRAFT_3841 0.31 +0.5
48,683 - EX28DRAFT_3841 0.31 +0.1
48,766 + EX28DRAFT_3841 0.42 -0.1
48,767 - EX28DRAFT_3841 0.42 +1.2
48,856 + EX28DRAFT_3841 0.54 +1.3
48,857 - EX28DRAFT_3841 0.55 +1.1
49,064 + EX28DRAFT_3841 0.82 -1.1
49,085 - EX28DRAFT_3841 0.85 -0.8
49,200 + +0.7
49,280 - -0.1
49,431 + EX28DRAFT_3842 0.12 +1.0
49,431 + EX28DRAFT_3842 0.12 -0.4
49,432 - EX28DRAFT_3842 0.12 +1.1
49,478 + EX28DRAFT_3842 0.17 -4.4
49,532 + EX28DRAFT_3842 0.23 -0.3
49,583 + EX28DRAFT_3842 0.28 -0.3
49,614 + EX28DRAFT_3842 0.31 -3.1
49,639 - EX28DRAFT_3842 0.34 -0.9
49,667 - EX28DRAFT_3842 0.37 -0.9
49,766 - EX28DRAFT_3842 0.47 +0.6
49,859 + EX28DRAFT_3842 0.57 -0.3
49,860 - EX28DRAFT_3842 0.57 -1.8
49,905 - EX28DRAFT_3842 0.61 -0.4
49,998 - EX28DRAFT_3842 0.71 +0.4
50,001 + EX28DRAFT_3842 0.71 +0.9
50,002 - EX28DRAFT_3842 0.71 +0.1
50,004 - EX28DRAFT_3842 0.72 +0.1
50,016 - EX28DRAFT_3842 0.73 +0.7

Or see this region's nucleotide sequence