Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3619 and EX28DRAFT_3620 are separated by 262 nucleotides EX28DRAFT_3620 and EX28DRAFT_3621 are separated by 110 nucleotides EX28DRAFT_3621 and EX28DRAFT_3622 are separated by 122 nucleotides
EX28DRAFT_3619: EX28DRAFT_3619 - amino acid carrier protein, at 278,483 to 279,913
_3619
EX28DRAFT_3620: EX28DRAFT_3620 - transaldolase, at 280,176 to 281,129
_3620
EX28DRAFT_3621: EX28DRAFT_3621 - molybdenum cofactor synthesis domain, at 281,240 to 281,827
_3621
EX28DRAFT_3622: EX28DRAFT_3622 - Arabinose efflux permease, at 281,950 to 283,272
_3622
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 279.211 kb on + strand, within EX28DRAFT_3619 at 279.445 kb on + strand, within EX28DRAFT_3619 at 279.520 kb on - strand, within EX28DRAFT_3619 at 279.520 kb on - strand, within EX28DRAFT_3619 at 279.520 kb on - strand, within EX28DRAFT_3619 at 279.520 kb on - strand, within EX28DRAFT_3619 at 279.520 kb on - strand, within EX28DRAFT_3619 at 279.520 kb on - strand, within EX28DRAFT_3619 at 279.567 kb on + strand, within EX28DRAFT_3619 at 279.568 kb on - strand, within EX28DRAFT_3619 at 279.740 kb on + strand, within EX28DRAFT_3619 at 279.797 kb on - strand at 279.799 kb on - strand at 279.838 kb on + strand at 279.839 kb on - strand at 279.944 kb on + strand at 279.944 kb on + strand at 279.949 kb on - strand at 280.012 kb on - strand at 280.081 kb on - strand at 280.081 kb on - strand at 280.081 kb on - strand at 280.097 kb on + strand at 280.144 kb on + strand at 280.172 kb on + strand at 280.172 kb on + strand at 280.173 kb on - strand at 280.173 kb on - strand at 280.220 kb on - strand at 280.255 kb on - strand at 280.387 kb on + strand, within EX28DRAFT_3620 at 280.452 kb on - strand, within EX28DRAFT_3620 at 280.559 kb on + strand, within EX28DRAFT_3620 at 280.580 kb on + strand, within EX28DRAFT_3620 at 280.581 kb on - strand, within EX28DRAFT_3620 at 280.690 kb on + strand, within EX28DRAFT_3620 at 280.691 kb on - strand, within EX28DRAFT_3620 at 280.691 kb on - strand, within EX28DRAFT_3620 at 280.691 kb on - strand, within EX28DRAFT_3620 at 280.692 kb on + strand, within EX28DRAFT_3620 at 280.731 kb on + strand, within EX28DRAFT_3620 at 280.731 kb on + strand, within EX28DRAFT_3620 at 280.732 kb on - strand, within EX28DRAFT_3620 at 280.793 kb on + strand, within EX28DRAFT_3620 at 280.803 kb on + strand, within EX28DRAFT_3620 at 280.812 kb on + strand, within EX28DRAFT_3620 at 280.812 kb on + strand, within EX28DRAFT_3620 at 280.813 kb on - strand, within EX28DRAFT_3620 at 280.959 kb on - strand, within EX28DRAFT_3620 at 280.969 kb on - strand, within EX28DRAFT_3620 at 281.050 kb on + strand at 281.128 kb on - strand at 281.165 kb on + strand at 281.200 kb on + strand at 281.240 kb on - strand at 281.245 kb on + strand at 281.245 kb on + strand at 281.245 kb on + strand at 281.250 kb on + strand at 281.250 kb on + strand at 281.262 kb on + strand at 281.262 kb on + strand at 281.556 kb on + strand, within EX28DRAFT_3621 at 281.556 kb on + strand, within EX28DRAFT_3621 at 281.556 kb on + strand, within EX28DRAFT_3621 at 281.563 kb on - strand, within EX28DRAFT_3621 at 281.724 kb on + strand, within EX28DRAFT_3621 at 281.735 kb on - strand, within EX28DRAFT_3621 at 281.756 kb on + strand, within EX28DRAFT_3621 at 281.756 kb on + strand, within EX28DRAFT_3621 at 281.757 kb on - strand, within EX28DRAFT_3621 at 281.818 kb on - strand at 281.838 kb on + strand at 281.838 kb on + strand at 281.838 kb on + strand at 281.839 kb on - strand at 281.849 kb on - strand at 281.881 kb on - strand at 281.950 kb on - strand at 281.958 kb on + strand at 281.958 kb on + strand at 281.959 kb on - strand at 281.959 kb on - strand at 281.986 kb on + strand at 282.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 279,211 + EX28DRAFT_3619 0.51 -2.5 279,445 + EX28DRAFT_3619 0.67 -0.2 279,520 - EX28DRAFT_3619 0.72 -0.1 279,520 - EX28DRAFT_3619 0.72 -2.5 279,520 - EX28DRAFT_3619 0.72 -0.6 279,520 - EX28DRAFT_3619 0.72 +4.5 279,520 - EX28DRAFT_3619 0.72 +0.0 279,520 - EX28DRAFT_3619 0.72 +0.9 279,567 + EX28DRAFT_3619 0.76 +0.9 279,568 - EX28DRAFT_3619 0.76 -0.6 279,740 + EX28DRAFT_3619 0.88 +0.0 279,797 - +0.1 279,799 - +0.4 279,838 + -2.1 279,839 - -1.5 279,944 + +0.5 279,944 + +2.9 279,949 - -1.4 280,012 - +0.2 280,081 - -0.7 280,081 - +0.0 280,081 - +2.2 280,097 + +0.6 280,144 + -0.9 280,172 + +0.2 280,172 + -0.9 280,173 - -0.3 280,173 - -1.2 280,220 - -1.2 280,255 - +0.9 280,387 + EX28DRAFT_3620 0.22 -0.5 280,452 - EX28DRAFT_3620 0.29 -0.3 280,559 + EX28DRAFT_3620 0.40 +0.0 280,580 + EX28DRAFT_3620 0.42 -0.2 280,581 - EX28DRAFT_3620 0.42 -0.6 280,690 + EX28DRAFT_3620 0.54 -0.7 280,691 - EX28DRAFT_3620 0.54 -1.9 280,691 - EX28DRAFT_3620 0.54 -0.1 280,691 - EX28DRAFT_3620 0.54 +1.6 280,692 + EX28DRAFT_3620 0.54 +0.9 280,731 + EX28DRAFT_3620 0.58 -1.5 280,731 + EX28DRAFT_3620 0.58 -1.5 280,732 - EX28DRAFT_3620 0.58 +0.0 280,793 + EX28DRAFT_3620 0.65 -0.6 280,803 + EX28DRAFT_3620 0.66 -0.6 280,812 + EX28DRAFT_3620 0.67 -1.5 280,812 + EX28DRAFT_3620 0.67 -1.9 280,813 - EX28DRAFT_3620 0.67 -0.1 280,959 - EX28DRAFT_3620 0.82 -1.0 280,969 - EX28DRAFT_3620 0.83 -1.0 281,050 + -0.4 281,128 - +0.5 281,165 + -0.8 281,200 + +0.8 281,240 - -0.4 281,245 + -0.1 281,245 + +0.8 281,245 + +0.4 281,250 + +0.1 281,250 + +0.0 281,262 + -0.1 281,262 + -0.2 281,556 + EX28DRAFT_3621 0.54 +3.5 281,556 + EX28DRAFT_3621 0.54 -0.7 281,556 + EX28DRAFT_3621 0.54 -1.3 281,563 - EX28DRAFT_3621 0.55 -0.6 281,724 + EX28DRAFT_3621 0.82 -0.5 281,735 - EX28DRAFT_3621 0.84 -1.0 281,756 + EX28DRAFT_3621 0.88 -1.0 281,756 + EX28DRAFT_3621 0.88 +0.3 281,757 - EX28DRAFT_3621 0.88 +1.4 281,818 - -0.7 281,838 + -0.4 281,838 + -0.3 281,838 + -0.1 281,839 - +0.4 281,849 - -2.1 281,881 - -0.4 281,950 - -0.7 281,958 + +1.4 281,958 + +1.1 281,959 - -1.4 281,959 - -0.1 281,986 + -0.1 282,069 - +0.2
Or see this region's nucleotide sequence