Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3579 and EX28DRAFT_3580 are separated by 102 nucleotides EX28DRAFT_3580 and EX28DRAFT_3581 overlap by 32 nucleotides EX28DRAFT_3581 and EX28DRAFT_3582 are separated by 20 nucleotides EX28DRAFT_3582 and EX28DRAFT_3583 are separated by 91 nucleotides
EX28DRAFT_3579: EX28DRAFT_3579 - 16S RNA G1207 methylase RsmC, at 237,167 to 238,195
_3579
EX28DRAFT_3580: EX28DRAFT_3580 - DNA polymerase III, psi subunit (EC 2.7.7.7), at 238,298 to 238,711
_3580
EX28DRAFT_3581: EX28DRAFT_3581 - ribosomal-protein-alanine acetyltransferase, at 238,680 to 239,123
_3581
EX28DRAFT_3582: EX28DRAFT_3582 - noncanonical pyrimidine nucleotidase, YjjG family, at 239,144 to 239,821
_3582
EX28DRAFT_3583: EX28DRAFT_3583 - peptide chain release factor 3, at 239,913 to 241,502
_3583
Position (kb) 239
240 Strain fitness (log2 ratio) -2
-1
0
1
2 at 238.229 kb on + strand at 238.229 kb on + strand at 238.229 kb on + strand at 238.230 kb on - strand at 238.230 kb on - strand at 238.230 kb on - strand at 238.230 kb on - strand at 238.230 kb on - strand at 238.232 kb on + strand at 238.236 kb on + strand at 238.237 kb on - strand at 238.237 kb on - strand at 238.881 kb on - strand, within EX28DRAFT_3581 at 239.060 kb on + strand, within EX28DRAFT_3581 at 239.065 kb on - strand, within EX28DRAFT_3581 at 239.065 kb on - strand, within EX28DRAFT_3581 at 239.131 kb on + strand at 239.132 kb on - strand at 239.188 kb on + strand at 239.189 kb on - strand at 239.189 kb on - strand at 239.367 kb on + strand, within EX28DRAFT_3582 at 239.586 kb on + strand, within EX28DRAFT_3582 at 239.587 kb on - strand, within EX28DRAFT_3582 at 239.587 kb on - strand, within EX28DRAFT_3582 at 239.590 kb on + strand, within EX28DRAFT_3582 at 239.636 kb on - strand, within EX28DRAFT_3582 at 239.844 kb on + strand at 239.895 kb on - strand at 239.928 kb on + strand at 239.929 kb on - strand at 240.206 kb on + strand, within EX28DRAFT_3583 at 240.459 kb on + strand, within EX28DRAFT_3583 at 240.460 kb on - strand, within EX28DRAFT_3583 at 240.460 kb on - strand, within EX28DRAFT_3583 at 240.468 kb on + strand, within EX28DRAFT_3583 at 240.484 kb on - strand, within EX28DRAFT_3583
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 238,229 + +1.0 238,229 + -0.1 238,229 + -2.3 238,230 - +0.5 238,230 - +0.4 238,230 - +0.8 238,230 - +1.6 238,230 - -2.5 238,232 + -1.5 238,236 + -1.7 238,237 - -1.1 238,237 - +0.2 238,881 - EX28DRAFT_3581 0.45 +0.4 239,060 + EX28DRAFT_3581 0.86 +0.5 239,065 - EX28DRAFT_3581 0.87 -0.2 239,065 - EX28DRAFT_3581 0.87 +0.6 239,131 + -0.2 239,132 - +0.6 239,188 + -0.0 239,189 - +0.2 239,189 - -0.8 239,367 + EX28DRAFT_3582 0.33 +0.6 239,586 + EX28DRAFT_3582 0.65 +1.7 239,587 - EX28DRAFT_3582 0.65 -0.9 239,587 - EX28DRAFT_3582 0.65 -0.2 239,590 + EX28DRAFT_3582 0.66 +0.1 239,636 - EX28DRAFT_3582 0.73 +1.5 239,844 + -1.0 239,895 - -0.3 239,928 + -2.6 239,929 - -0.3 240,206 + EX28DRAFT_3583 0.18 -1.7 240,459 + EX28DRAFT_3583 0.34 +2.0 240,460 - EX28DRAFT_3583 0.34 -2.1 240,460 - EX28DRAFT_3583 0.34 +0.4 240,468 + EX28DRAFT_3583 0.35 -1.8 240,484 - EX28DRAFT_3583 0.36 -0.3
Or see this region's nucleotide sequence