Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3549 and EX28DRAFT_3550 are separated by 92 nucleotides EX28DRAFT_3550 and EX28DRAFT_3551 overlap by 1 nucleotides EX28DRAFT_3551 and EX28DRAFT_3552 are separated by 1 nucleotides EX28DRAFT_3552 and EX28DRAFT_3553 are separated by 126 nucleotides
EX28DRAFT_3549: EX28DRAFT_3549 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 213,067 to 214,731
_3549
EX28DRAFT_3550: EX28DRAFT_3550 - Predicted acetyltransferase, at 214,824 to 215,360
_3550
EX28DRAFT_3551: EX28DRAFT_3551 - hypothetical protein, at 215,360 to 215,833
_3551
EX28DRAFT_3552: EX28DRAFT_3552 - Transcriptional regulatory protein, C terminal, at 215,835 to 216,575
_3552
EX28DRAFT_3553: EX28DRAFT_3553 - Uncharacterized secreted protein, at 216,702 to 217,658
_3553
Position (kb) 215
216 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 214.823 kb on - strand at 214.826 kb on - strand at 214.965 kb on + strand, within EX28DRAFT_3550 at 214.966 kb on - strand, within EX28DRAFT_3550 at 215.009 kb on + strand, within EX28DRAFT_3550 at 215.093 kb on + strand, within EX28DRAFT_3550 at 215.167 kb on - strand, within EX28DRAFT_3550 at 215.167 kb on - strand, within EX28DRAFT_3550 at 215.340 kb on + strand at 215.340 kb on + strand at 215.341 kb on - strand at 215.362 kb on - strand at 215.473 kb on - strand, within EX28DRAFT_3551 at 215.569 kb on + strand, within EX28DRAFT_3551 at 215.665 kb on + strand, within EX28DRAFT_3551 at 215.763 kb on + strand, within EX28DRAFT_3551 at 215.810 kb on + strand at 215.833 kb on + strand at 215.834 kb on - strand at 215.846 kb on - strand at 215.848 kb on + strand at 215.848 kb on + strand at 215.851 kb on + strand at 215.852 kb on - strand at 215.852 kb on - strand at 215.852 kb on - strand at 215.852 kb on - strand at 215.953 kb on + strand, within EX28DRAFT_3552 at 215.954 kb on - strand, within EX28DRAFT_3552 at 216.051 kb on - strand, within EX28DRAFT_3552 at 216.272 kb on + strand, within EX28DRAFT_3552 at 216.352 kb on + strand, within EX28DRAFT_3552 at 216.467 kb on + strand, within EX28DRAFT_3552 at 216.467 kb on + strand, within EX28DRAFT_3552 at 216.515 kb on + strand at 216.515 kb on + strand at 216.516 kb on - strand at 216.575 kb on + strand at 216.585 kb on + strand at 216.622 kb on + strand at 216.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 214,823 - -0.1 214,826 - +0.4 214,965 + EX28DRAFT_3550 0.26 +1.2 214,966 - EX28DRAFT_3550 0.26 -0.6 215,009 + EX28DRAFT_3550 0.34 -0.3 215,093 + EX28DRAFT_3550 0.50 -2.7 215,167 - EX28DRAFT_3550 0.64 -0.4 215,167 - EX28DRAFT_3550 0.64 -2.1 215,340 + -0.5 215,340 + -0.6 215,341 - -0.4 215,362 - -0.5 215,473 - EX28DRAFT_3551 0.24 -0.4 215,569 + EX28DRAFT_3551 0.44 +0.2 215,665 + EX28DRAFT_3551 0.64 +2.3 215,763 + EX28DRAFT_3551 0.85 +0.0 215,810 + -0.9 215,833 + -0.8 215,834 - +1.3 215,846 - -0.4 215,848 + +0.4 215,848 + +0.8 215,851 + -0.5 215,852 - -0.3 215,852 - -0.2 215,852 - -1.2 215,852 - -2.9 215,953 + EX28DRAFT_3552 0.16 -0.3 215,954 - EX28DRAFT_3552 0.16 -1.8 216,051 - EX28DRAFT_3552 0.29 -1.8 216,272 + EX28DRAFT_3552 0.59 +1.3 216,352 + EX28DRAFT_3552 0.70 -0.5 216,467 + EX28DRAFT_3552 0.85 +1.9 216,467 + EX28DRAFT_3552 0.85 -0.6 216,515 + -1.0 216,515 + +3.4 216,516 - -0.0 216,575 + +0.3 216,585 + -1.2 216,622 + -0.0 216,788 - +0.9
Or see this region's nucleotide sequence