Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3536

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3534 and EX28DRAFT_3535 are separated by 10 nucleotidesEX28DRAFT_3535 and EX28DRAFT_3536 are separated by 100 nucleotidesEX28DRAFT_3536 and EX28DRAFT_3537 are separated by 191 nucleotides EX28DRAFT_3534: EX28DRAFT_3534 - Putative GTPases (G3E family), at 197,349 to 198,302 _3534 EX28DRAFT_3535: EX28DRAFT_3535 - Uncharacterized small protein, at 198,313 to 198,516 _3535 EX28DRAFT_3536: EX28DRAFT_3536 - Carbon starvation protein, predicted membrane protein, at 198,617 to 200,770 _3536 EX28DRAFT_3537: EX28DRAFT_3537 - Predicted transcriptional regulator, at 200,962 to 201,879 _3537 Position (kb) 198 199 200 201Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 197.699 kb on + strand, within EX28DRAFT_3534at 197.699 kb on + strand, within EX28DRAFT_3534at 197.700 kb on - strand, within EX28DRAFT_3534at 197.755 kb on + strand, within EX28DRAFT_3534at 197.925 kb on + strand, within EX28DRAFT_3534at 197.926 kb on - strand, within EX28DRAFT_3534at 197.926 kb on - strand, within EX28DRAFT_3534at 198.085 kb on - strand, within EX28DRAFT_3534at 198.386 kb on + strand, within EX28DRAFT_3535at 198.386 kb on + strand, within EX28DRAFT_3535at 198.387 kb on - strand, within EX28DRAFT_3535at 198.387 kb on - strand, within EX28DRAFT_3535at 198.423 kb on + strand, within EX28DRAFT_3535at 198.423 kb on + strand, within EX28DRAFT_3535at 198.423 kb on + strand, within EX28DRAFT_3535at 198.434 kb on + strand, within EX28DRAFT_3535at 198.434 kb on + strand, within EX28DRAFT_3535at 198.434 kb on + strand, within EX28DRAFT_3535at 198.434 kb on + strand, within EX28DRAFT_3535at 198.502 kb on + strandat 198.565 kb on - strandat 198.741 kb on + strandat 198.784 kb on - strandat 198.784 kb on - strandat 198.784 kb on - strandat 198.864 kb on + strand, within EX28DRAFT_3536at 198.984 kb on + strand, within EX28DRAFT_3536at 198.984 kb on + strand, within EX28DRAFT_3536at 198.984 kb on + strand, within EX28DRAFT_3536at 198.985 kb on - strand, within EX28DRAFT_3536at 198.985 kb on - strand, within EX28DRAFT_3536at 198.985 kb on - strand, within EX28DRAFT_3536at 199.430 kb on - strand, within EX28DRAFT_3536at 199.923 kb on + strand, within EX28DRAFT_3536at 199.923 kb on + strand, within EX28DRAFT_3536at 199.924 kb on - strand, within EX28DRAFT_3536at 199.924 kb on - strand, within EX28DRAFT_3536at 199.924 kb on - strand, within EX28DRAFT_3536at 199.969 kb on + strand, within EX28DRAFT_3536at 199.970 kb on - strand, within EX28DRAFT_3536at 199.970 kb on - strand, within EX28DRAFT_3536at 199.996 kb on + strand, within EX28DRAFT_3536at 200.064 kb on + strand, within EX28DRAFT_3536at 200.064 kb on + strand, within EX28DRAFT_3536at 200.089 kb on + strand, within EX28DRAFT_3536at 200.139 kb on + strand, within EX28DRAFT_3536at 200.140 kb on - strand, within EX28DRAFT_3536at 200.140 kb on - strand, within EX28DRAFT_3536at 200.365 kb on + strand, within EX28DRAFT_3536at 200.509 kb on - strand, within EX28DRAFT_3536at 200.526 kb on + strand, within EX28DRAFT_3536at 200.526 kb on + strand, within EX28DRAFT_3536at 200.527 kb on - strand, within EX28DRAFT_3536at 200.601 kb on + strandat 200.601 kb on + strandat 200.602 kb on - strandat 200.610 kb on + strandat 200.613 kb on + strandat 200.632 kb on - strandat 200.669 kb on + strandat 200.669 kb on + strandat 200.670 kb on - strandat 200.761 kb on + strandat 200.765 kb on - strandat 200.773 kb on + strandat 200.788 kb on + strandat 200.793 kb on - strandat 200.827 kb on + strandat 200.828 kb on - strandat 200.834 kb on + strandat 200.995 kb on - strandat 201.011 kb on + strandat 201.027 kb on + strandat 201.084 kb on - strand, within EX28DRAFT_3537at 201.197 kb on + strand, within EX28DRAFT_3537at 201.210 kb on + strand, within EX28DRAFT_3537at 201.304 kb on - strand, within EX28DRAFT_3537at 201.333 kb on + strand, within EX28DRAFT_3537at 201.555 kb on + strand, within EX28DRAFT_3537at 201.714 kb on + strand, within EX28DRAFT_3537at 201.742 kb on + strand, within EX28DRAFT_3537

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
197,699 + EX28DRAFT_3534 0.37 +0.0
197,699 + EX28DRAFT_3534 0.37 +0.9
197,700 - EX28DRAFT_3534 0.37 +1.4
197,755 + EX28DRAFT_3534 0.43 +1.3
197,925 + EX28DRAFT_3534 0.60 -0.3
197,926 - EX28DRAFT_3534 0.60 +1.1
197,926 - EX28DRAFT_3534 0.60 +0.0
198,085 - EX28DRAFT_3534 0.77 -1.8
198,386 + EX28DRAFT_3535 0.36 -0.7
198,386 + EX28DRAFT_3535 0.36 -0.8
198,387 - EX28DRAFT_3535 0.36 -0.5
198,387 - EX28DRAFT_3535 0.36 +0.0
198,423 + EX28DRAFT_3535 0.54 +0.2
198,423 + EX28DRAFT_3535 0.54 +0.2
198,423 + EX28DRAFT_3535 0.54 +0.0
198,434 + EX28DRAFT_3535 0.59 +1.3
198,434 + EX28DRAFT_3535 0.59 +0.2
198,434 + EX28DRAFT_3535 0.59 -1.4
198,434 + EX28DRAFT_3535 0.59 -0.3
198,502 + +0.3
198,565 - +0.3
198,741 + -1.7
198,784 - -0.2
198,784 - +0.0
198,784 - +0.9
198,864 + EX28DRAFT_3536 0.11 -0.7
198,984 + EX28DRAFT_3536 0.17 +0.0
198,984 + EX28DRAFT_3536 0.17 +1.8
198,984 + EX28DRAFT_3536 0.17 +0.4
198,985 - EX28DRAFT_3536 0.17 +0.0
198,985 - EX28DRAFT_3536 0.17 -2.3
198,985 - EX28DRAFT_3536 0.17 -0.1
199,430 - EX28DRAFT_3536 0.38 +0.3
199,923 + EX28DRAFT_3536 0.61 -0.0
199,923 + EX28DRAFT_3536 0.61 -2.0
199,924 - EX28DRAFT_3536 0.61 +0.2
199,924 - EX28DRAFT_3536 0.61 +0.4
199,924 - EX28DRAFT_3536 0.61 +0.4
199,969 + EX28DRAFT_3536 0.63 -0.2
199,970 - EX28DRAFT_3536 0.63 -0.8
199,970 - EX28DRAFT_3536 0.63 +1.3
199,996 + EX28DRAFT_3536 0.64 +0.4
200,064 + EX28DRAFT_3536 0.67 +2.3
200,064 + EX28DRAFT_3536 0.67 -0.5
200,089 + EX28DRAFT_3536 0.68 +0.9
200,139 + EX28DRAFT_3536 0.71 +0.6
200,140 - EX28DRAFT_3536 0.71 +0.0
200,140 - EX28DRAFT_3536 0.71 -0.0
200,365 + EX28DRAFT_3536 0.81 -0.3
200,509 - EX28DRAFT_3536 0.88 +0.2
200,526 + EX28DRAFT_3536 0.89 -0.3
200,526 + EX28DRAFT_3536 0.89 -0.7
200,527 - EX28DRAFT_3536 0.89 -2.6
200,601 + +0.8
200,601 + +0.4
200,602 - +0.5
200,610 + -0.3
200,613 + +1.4
200,632 - -0.2
200,669 + -1.8
200,669 + +0.2
200,670 - -3.4
200,761 + -1.0
200,765 - -1.9
200,773 + -0.8
200,788 + +0.7
200,793 - -0.0
200,827 + -0.6
200,828 - +0.1
200,834 + +0.3
200,995 - -0.6
201,011 + +0.9
201,027 + -0.5
201,084 - EX28DRAFT_3537 0.13 -2.3
201,197 + EX28DRAFT_3537 0.26 +0.9
201,210 + EX28DRAFT_3537 0.27 +1.7
201,304 - EX28DRAFT_3537 0.37 +1.1
201,333 + EX28DRAFT_3537 0.40 +0.0
201,555 + EX28DRAFT_3537 0.65 +0.3
201,714 + EX28DRAFT_3537 0.82 -0.8
201,742 + EX28DRAFT_3537 0.85 -3.4

Or see this region's nucleotide sequence