Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3533 and EX28DRAFT_3534 are separated by 476 nucleotides EX28DRAFT_3534 and EX28DRAFT_3535 are separated by 10 nucleotides EX28DRAFT_3535 and EX28DRAFT_3536 are separated by 100 nucleotides
EX28DRAFT_3533: EX28DRAFT_3533 - Uncharacterized protein conserved in bacteria, at 195,514 to 196,872
_3533
EX28DRAFT_3534: EX28DRAFT_3534 - Putative GTPases (G3E family), at 197,349 to 198,302
_3534
EX28DRAFT_3535: EX28DRAFT_3535 - Uncharacterized small protein, at 198,313 to 198,516
_3535
EX28DRAFT_3536: EX28DRAFT_3536 - Carbon starvation protein, predicted membrane protein, at 198,617 to 200,770
_3536
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.354 kb on + strand, within EX28DRAFT_3533 at 196.437 kb on + strand, within EX28DRAFT_3533 at 196.466 kb on - strand, within EX28DRAFT_3533 at 196.466 kb on - strand, within EX28DRAFT_3533 at 196.777 kb on - strand at 196.845 kb on + strand at 196.847 kb on + strand at 196.847 kb on + strand at 196.870 kb on + strand at 196.870 kb on + strand at 196.876 kb on + strand at 196.876 kb on + strand at 196.913 kb on + strand at 196.973 kb on + strand at 196.973 kb on + strand at 196.974 kb on - strand at 196.974 kb on - strand at 196.988 kb on + strand at 197.003 kb on - strand at 197.003 kb on - strand at 197.003 kb on - strand at 197.003 kb on - strand at 197.003 kb on - strand at 197.014 kb on + strand at 197.015 kb on - strand at 197.261 kb on + strand at 197.409 kb on - strand at 197.699 kb on + strand, within EX28DRAFT_3534 at 197.699 kb on + strand, within EX28DRAFT_3534 at 197.700 kb on - strand, within EX28DRAFT_3534 at 197.755 kb on + strand, within EX28DRAFT_3534 at 197.925 kb on + strand, within EX28DRAFT_3534 at 197.926 kb on - strand, within EX28DRAFT_3534 at 197.926 kb on - strand, within EX28DRAFT_3534 at 198.085 kb on - strand, within EX28DRAFT_3534 at 198.386 kb on + strand, within EX28DRAFT_3535 at 198.386 kb on + strand, within EX28DRAFT_3535 at 198.387 kb on - strand, within EX28DRAFT_3535 at 198.387 kb on - strand, within EX28DRAFT_3535 at 198.423 kb on + strand, within EX28DRAFT_3535 at 198.423 kb on + strand, within EX28DRAFT_3535 at 198.423 kb on + strand, within EX28DRAFT_3535 at 198.434 kb on + strand, within EX28DRAFT_3535 at 198.434 kb on + strand, within EX28DRAFT_3535 at 198.434 kb on + strand, within EX28DRAFT_3535 at 198.434 kb on + strand, within EX28DRAFT_3535 at 198.502 kb on + strand at 198.565 kb on - strand at 198.741 kb on + strand at 198.784 kb on - strand at 198.784 kb on - strand at 198.784 kb on - strand at 198.864 kb on + strand, within EX28DRAFT_3536 at 198.984 kb on + strand, within EX28DRAFT_3536 at 198.984 kb on + strand, within EX28DRAFT_3536 at 198.984 kb on + strand, within EX28DRAFT_3536 at 198.985 kb on - strand, within EX28DRAFT_3536 at 198.985 kb on - strand, within EX28DRAFT_3536 at 198.985 kb on - strand, within EX28DRAFT_3536
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 196,354 + EX28DRAFT_3533 0.62 +0.3 196,437 + EX28DRAFT_3533 0.68 +0.2 196,466 - EX28DRAFT_3533 0.70 +0.5 196,466 - EX28DRAFT_3533 0.70 +0.5 196,777 - -1.8 196,845 + +1.4 196,847 + -0.1 196,847 + -2.7 196,870 + -0.9 196,870 + +0.2 196,876 + +2.5 196,876 + -0.8 196,913 + +0.5 196,973 + +0.6 196,973 + +0.6 196,974 - -1.6 196,974 - -0.1 196,988 + -0.9 197,003 - -0.4 197,003 - -2.9 197,003 - +1.5 197,003 - +1.6 197,003 - +0.7 197,014 + -0.7 197,015 - -0.9 197,261 + -0.5 197,409 - +0.2 197,699 + EX28DRAFT_3534 0.37 +0.0 197,699 + EX28DRAFT_3534 0.37 +0.9 197,700 - EX28DRAFT_3534 0.37 +1.4 197,755 + EX28DRAFT_3534 0.43 +1.3 197,925 + EX28DRAFT_3534 0.60 -0.3 197,926 - EX28DRAFT_3534 0.60 +1.1 197,926 - EX28DRAFT_3534 0.60 +0.0 198,085 - EX28DRAFT_3534 0.77 -1.8 198,386 + EX28DRAFT_3535 0.36 -0.7 198,386 + EX28DRAFT_3535 0.36 -0.8 198,387 - EX28DRAFT_3535 0.36 -0.5 198,387 - EX28DRAFT_3535 0.36 +0.0 198,423 + EX28DRAFT_3535 0.54 +0.2 198,423 + EX28DRAFT_3535 0.54 +0.2 198,423 + EX28DRAFT_3535 0.54 +0.0 198,434 + EX28DRAFT_3535 0.59 +1.3 198,434 + EX28DRAFT_3535 0.59 +0.2 198,434 + EX28DRAFT_3535 0.59 -1.4 198,434 + EX28DRAFT_3535 0.59 -0.3 198,502 + +0.3 198,565 - +0.3 198,741 + -1.7 198,784 - -0.2 198,784 - +0.0 198,784 - +0.9 198,864 + EX28DRAFT_3536 0.11 -0.7 198,984 + EX28DRAFT_3536 0.17 +0.0 198,984 + EX28DRAFT_3536 0.17 +1.8 198,984 + EX28DRAFT_3536 0.17 +0.4 198,985 - EX28DRAFT_3536 0.17 +0.0 198,985 - EX28DRAFT_3536 0.17 -2.3 198,985 - EX28DRAFT_3536 0.17 -0.1
Or see this region's nucleotide sequence