Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3528

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3527 and EX28DRAFT_3528 are separated by 101 nucleotidesEX28DRAFT_3528 and EX28DRAFT_3529 are separated by 47 nucleotidesEX28DRAFT_3529 and EX28DRAFT_3530 are separated by 151 nucleotides EX28DRAFT_3527: EX28DRAFT_3527 - Restriction endonuclease, at 189,948 to 191,130 _3527 EX28DRAFT_3528: EX28DRAFT_3528 - Putative threonine efflux protein, at 191,232 to 191,879 _3528 EX28DRAFT_3529: EX28DRAFT_3529 - AraC-type DNA-binding domain-containing proteins, at 191,927 to 192,670 _3529 EX28DRAFT_3530: EX28DRAFT_3530 - NAD-dependent aldehyde dehydrogenases, at 192,822 to 194,192 _3530 Position (kb) 191 192Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 190.235 kb on + strand, within EX28DRAFT_3527at 190.236 kb on - strand, within EX28DRAFT_3527at 190.282 kb on - strand, within EX28DRAFT_3527at 190.388 kb on - strand, within EX28DRAFT_3527at 190.534 kb on + strand, within EX28DRAFT_3527at 190.535 kb on - strand, within EX28DRAFT_3527at 190.535 kb on - strand, within EX28DRAFT_3527at 190.535 kb on - strand, within EX28DRAFT_3527at 190.535 kb on - strand, within EX28DRAFT_3527at 190.537 kb on + strand, within EX28DRAFT_3527at 190.538 kb on - strand, within EX28DRAFT_3527at 190.582 kb on + strand, within EX28DRAFT_3527at 190.583 kb on - strand, within EX28DRAFT_3527at 190.583 kb on - strand, within EX28DRAFT_3527at 190.583 kb on - strand, within EX28DRAFT_3527at 190.583 kb on - strand, within EX28DRAFT_3527at 190.668 kb on + strand, within EX28DRAFT_3527at 190.668 kb on + strand, within EX28DRAFT_3527at 190.668 kb on + strand, within EX28DRAFT_3527at 190.668 kb on + strand, within EX28DRAFT_3527at 190.767 kb on - strand, within EX28DRAFT_3527at 190.805 kb on + strand, within EX28DRAFT_3527at 190.847 kb on + strand, within EX28DRAFT_3527at 190.858 kb on + strand, within EX28DRAFT_3527at 190.858 kb on + strand, within EX28DRAFT_3527at 190.858 kb on + strand, within EX28DRAFT_3527at 190.859 kb on - strand, within EX28DRAFT_3527at 190.863 kb on - strand, within EX28DRAFT_3527at 190.867 kb on + strand, within EX28DRAFT_3527at 190.868 kb on - strand, within EX28DRAFT_3527at 190.962 kb on - strand, within EX28DRAFT_3527at 190.962 kb on - strand, within EX28DRAFT_3527at 190.962 kb on - strand, within EX28DRAFT_3527at 190.962 kb on - strand, within EX28DRAFT_3527at 191.031 kb on + strandat 191.031 kb on + strandat 191.032 kb on - strandat 191.032 kb on - strandat 191.032 kb on - strandat 191.090 kb on + strandat 191.090 kb on + strandat 191.091 kb on - strandat 191.091 kb on - strandat 191.184 kb on - strandat 191.186 kb on + strandat 191.186 kb on + strandat 191.189 kb on + strandat 191.193 kb on + strandat 191.193 kb on + strandat 191.629 kb on + strand, within EX28DRAFT_3528at 191.657 kb on + strand, within EX28DRAFT_3528at 191.657 kb on + strand, within EX28DRAFT_3528at 191.670 kb on - strand, within EX28DRAFT_3528at 191.670 kb on - strand, within EX28DRAFT_3528at 191.713 kb on + strand, within EX28DRAFT_3528at 191.713 kb on + strand, within EX28DRAFT_3528at 191.714 kb on - strand, within EX28DRAFT_3528at 191.714 kb on - strand, within EX28DRAFT_3528at 191.714 kb on - strand, within EX28DRAFT_3528at 191.817 kb on + strandat 191.818 kb on - strandat 191.912 kb on - strandat 191.928 kb on + strandat 191.928 kb on + strandat 191.932 kb on + strandat 191.932 kb on + strandat 191.933 kb on - strandat 191.933 kb on - strandat 191.943 kb on - strandat 191.985 kb on + strandat 191.986 kb on - strandat 192.053 kb on - strand, within EX28DRAFT_3529at 192.346 kb on - strand, within EX28DRAFT_3529at 192.408 kb on + strand, within EX28DRAFT_3529at 192.408 kb on + strand, within EX28DRAFT_3529at 192.409 kb on - strand, within EX28DRAFT_3529at 192.415 kb on + strand, within EX28DRAFT_3529at 192.415 kb on + strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.420 kb on + strand, within EX28DRAFT_3529at 192.420 kb on + strand, within EX28DRAFT_3529at 192.421 kb on - strand, within EX28DRAFT_3529at 192.504 kb on + strand, within EX28DRAFT_3529at 192.504 kb on + strand, within EX28DRAFT_3529at 192.504 kb on + strand, within EX28DRAFT_3529at 192.504 kb on + strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.595 kb on + strand, within EX28DRAFT_3529at 192.595 kb on + strand, within EX28DRAFT_3529at 192.596 kb on - strandat 192.653 kb on - strandat 192.696 kb on + strandat 192.748 kb on - strandat 192.748 kb on - strandat 192.748 kb on - strandat 192.748 kb on - strandat 192.757 kb on + strandat 192.757 kb on + strandat 192.788 kb on + strandat 192.788 kb on + strandat 192.796 kb on + strandat 192.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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190,235 + EX28DRAFT_3527 0.24 -0.8
190,236 - EX28DRAFT_3527 0.24 +0.8
190,282 - EX28DRAFT_3527 0.28 +0.7
190,388 - EX28DRAFT_3527 0.37 +2.7
190,534 + EX28DRAFT_3527 0.50 -0.9
190,535 - EX28DRAFT_3527 0.50 +3.1
190,535 - EX28DRAFT_3527 0.50 +1.2
190,535 - EX28DRAFT_3527 0.50 +1.4
190,535 - EX28DRAFT_3527 0.50 -0.2
190,537 + EX28DRAFT_3527 0.50 -0.5
190,538 - EX28DRAFT_3527 0.50 -0.0
190,582 + EX28DRAFT_3527 0.54 -0.2
190,583 - EX28DRAFT_3527 0.54 +0.3
190,583 - EX28DRAFT_3527 0.54 +0.4
190,583 - EX28DRAFT_3527 0.54 +0.3
190,583 - EX28DRAFT_3527 0.54 +0.6
190,668 + EX28DRAFT_3527 0.61 +0.6
190,668 + EX28DRAFT_3527 0.61 +0.4
190,668 + EX28DRAFT_3527 0.61 +1.4
190,668 + EX28DRAFT_3527 0.61 +0.2
190,767 - EX28DRAFT_3527 0.69 +0.3
190,805 + EX28DRAFT_3527 0.72 -0.3
190,847 + EX28DRAFT_3527 0.76 +0.5
190,858 + EX28DRAFT_3527 0.77 -1.2
190,858 + EX28DRAFT_3527 0.77 -0.4
190,858 + EX28DRAFT_3527 0.77 +0.3
190,859 - EX28DRAFT_3527 0.77 +0.2
190,863 - EX28DRAFT_3527 0.77 -0.1
190,867 + EX28DRAFT_3527 0.78 -0.8
190,868 - EX28DRAFT_3527 0.78 +0.5
190,962 - EX28DRAFT_3527 0.86 -2.1
190,962 - EX28DRAFT_3527 0.86 -0.2
190,962 - EX28DRAFT_3527 0.86 +0.1
190,962 - EX28DRAFT_3527 0.86 -1.6
191,031 + +1.9
191,031 + +1.1
191,032 - -0.8
191,032 - +0.0
191,032 - -1.8
191,090 + +2.7
191,090 + -0.1
191,091 - +0.1
191,091 - -0.3
191,184 - -0.5
191,186 + +0.5
191,186 + +0.5
191,189 + +0.4
191,193 + +0.6
191,193 + -3.2
191,629 + EX28DRAFT_3528 0.61 +0.1
191,657 + EX28DRAFT_3528 0.66 +0.0
191,657 + EX28DRAFT_3528 0.66 +0.4
191,670 - EX28DRAFT_3528 0.68 -0.2
191,670 - EX28DRAFT_3528 0.68 -2.1
191,713 + EX28DRAFT_3528 0.74 +0.6
191,713 + EX28DRAFT_3528 0.74 -0.2
191,714 - EX28DRAFT_3528 0.74 +1.1
191,714 - EX28DRAFT_3528 0.74 +0.0
191,714 - EX28DRAFT_3528 0.74 +1.5
191,817 + -1.0
191,818 - -0.9
191,912 - +1.1
191,928 + +0.5
191,928 + -0.3
191,932 + -0.3
191,932 + +0.2
191,933 - +0.0
191,933 - +0.9
191,943 - +0.5
191,985 + +1.0
191,986 - -2.6
192,053 - EX28DRAFT_3529 0.17 -2.4
192,346 - EX28DRAFT_3529 0.56 +0.3
192,408 + EX28DRAFT_3529 0.65 -1.8
192,408 + EX28DRAFT_3529 0.65 +0.9
192,409 - EX28DRAFT_3529 0.65 +0.4
192,415 + EX28DRAFT_3529 0.66 -0.6
192,415 + EX28DRAFT_3529 0.66 +1.9
192,416 - EX28DRAFT_3529 0.66 +1.6
192,416 - EX28DRAFT_3529 0.66 +0.0
192,416 - EX28DRAFT_3529 0.66 +0.6
192,416 - EX28DRAFT_3529 0.66 +0.5
192,416 - EX28DRAFT_3529 0.66 +0.9
192,416 - EX28DRAFT_3529 0.66 +0.2
192,420 + EX28DRAFT_3529 0.66 +0.4
192,420 + EX28DRAFT_3529 0.66 -0.3
192,421 - EX28DRAFT_3529 0.66 +0.0
192,504 + EX28DRAFT_3529 0.78 +0.1
192,504 + EX28DRAFT_3529 0.78 -0.3
192,504 + EX28DRAFT_3529 0.78 +0.5
192,504 + EX28DRAFT_3529 0.78 -0.3
192,505 - EX28DRAFT_3529 0.78 -0.8
192,505 - EX28DRAFT_3529 0.78 -3.8
192,505 - EX28DRAFT_3529 0.78 +0.5
192,505 - EX28DRAFT_3529 0.78 +0.5
192,505 - EX28DRAFT_3529 0.78 -0.4
192,595 + EX28DRAFT_3529 0.90 +0.1
192,595 + EX28DRAFT_3529 0.90 +2.8
192,596 - +3.0
192,653 - +0.5
192,696 + -0.8
192,748 - -0.6
192,748 - +0.3
192,748 - +0.9
192,748 - -1.3
192,757 + -1.2
192,757 + -1.4
192,788 + +0.1
192,788 + -0.1
192,796 + +1.0
192,839 - +1.1

Or see this region's nucleotide sequence