Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3521 and EX28DRAFT_3522 overlap by 11 nucleotides EX28DRAFT_3522 and EX28DRAFT_3523 overlap by 4 nucleotides
EX28DRAFT_3521: EX28DRAFT_3521 - Multidrug resistance efflux pump, at 184,874 to 185,938
_3521
EX28DRAFT_3522: EX28DRAFT_3522 - Protein of unknown function (DUF2955), at 185,928 to 187,019
_3522
EX28DRAFT_3523: EX28DRAFT_3523 - Predicted membrane protein, at 187,016 to 188,287
_3523
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 184.948 kb on + strand at 185.046 kb on + strand, within EX28DRAFT_3521 at 185.046 kb on + strand, within EX28DRAFT_3521 at 185.047 kb on - strand, within EX28DRAFT_3521 at 185.477 kb on + strand, within EX28DRAFT_3521 at 185.478 kb on - strand, within EX28DRAFT_3521 at 185.478 kb on - strand, within EX28DRAFT_3521 at 185.858 kb on + strand at 185.927 kb on + strand at 185.928 kb on - strand at 185.933 kb on + strand at 185.937 kb on - strand at 185.948 kb on + strand at 185.948 kb on + strand at 185.949 kb on - strand at 185.952 kb on - strand at 185.972 kb on + strand at 185.994 kb on + strand at 185.997 kb on - strand at 186.137 kb on + strand, within EX28DRAFT_3522 at 186.161 kb on + strand, within EX28DRAFT_3522 at 186.211 kb on - strand, within EX28DRAFT_3522 at 186.261 kb on - strand, within EX28DRAFT_3522 at 186.278 kb on + strand, within EX28DRAFT_3522 at 186.348 kb on - strand, within EX28DRAFT_3522 at 186.438 kb on + strand, within EX28DRAFT_3522 at 186.438 kb on + strand, within EX28DRAFT_3522 at 186.438 kb on + strand, within EX28DRAFT_3522 at 186.628 kb on - strand, within EX28DRAFT_3522 at 186.688 kb on - strand, within EX28DRAFT_3522 at 186.715 kb on - strand, within EX28DRAFT_3522 at 186.731 kb on + strand, within EX28DRAFT_3522 at 186.732 kb on - strand, within EX28DRAFT_3522 at 186.732 kb on - strand, within EX28DRAFT_3522 at 186.846 kb on - strand, within EX28DRAFT_3522 at 186.897 kb on + strand, within EX28DRAFT_3522 at 187.018 kb on - strand at 187.127 kb on - strand at 187.673 kb on - strand, within EX28DRAFT_3523 at 187.723 kb on + strand, within EX28DRAFT_3523 at 187.724 kb on - strand, within EX28DRAFT_3523
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 184,948 + -0.5 185,046 + EX28DRAFT_3521 0.16 -0.4 185,046 + EX28DRAFT_3521 0.16 +0.3 185,047 - EX28DRAFT_3521 0.16 -0.9 185,477 + EX28DRAFT_3521 0.57 -2.8 185,478 - EX28DRAFT_3521 0.57 +0.2 185,478 - EX28DRAFT_3521 0.57 -0.3 185,858 + -1.1 185,927 + -0.8 185,928 - -0.2 185,933 + -0.2 185,937 - -0.2 185,948 + +1.0 185,948 + -0.3 185,949 - +0.6 185,952 - +0.5 185,972 + -0.2 185,994 + -1.8 185,997 - +0.6 186,137 + EX28DRAFT_3522 0.19 +0.5 186,161 + EX28DRAFT_3522 0.21 +1.2 186,211 - EX28DRAFT_3522 0.26 -0.6 186,261 - EX28DRAFT_3522 0.30 +1.3 186,278 + EX28DRAFT_3522 0.32 +4.2 186,348 - EX28DRAFT_3522 0.38 -0.4 186,438 + EX28DRAFT_3522 0.47 +0.6 186,438 + EX28DRAFT_3522 0.47 -2.0 186,438 + EX28DRAFT_3522 0.47 +0.6 186,628 - EX28DRAFT_3522 0.64 -2.5 186,688 - EX28DRAFT_3522 0.70 -0.1 186,715 - EX28DRAFT_3522 0.72 +0.4 186,731 + EX28DRAFT_3522 0.74 +0.7 186,732 - EX28DRAFT_3522 0.74 +0.5 186,732 - EX28DRAFT_3522 0.74 +0.8 186,846 - EX28DRAFT_3522 0.84 +0.8 186,897 + EX28DRAFT_3522 0.89 +0.6 187,018 - -1.4 187,127 - -0.6 187,673 - EX28DRAFT_3523 0.52 +0.6 187,723 + EX28DRAFT_3523 0.56 +1.3 187,724 - EX28DRAFT_3523 0.56 -1.9
Or see this region's nucleotide sequence