Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3506

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3502 and EX28DRAFT_3503 are separated by 61 nucleotidesEX28DRAFT_3503 and EX28DRAFT_3504 overlap by 4 nucleotidesEX28DRAFT_3504 and EX28DRAFT_3505 are separated by 23 nucleotidesEX28DRAFT_3505 and EX28DRAFT_3506 are separated by 9 nucleotidesEX28DRAFT_3506 and EX28DRAFT_3507 are separated by 21 nucleotidesEX28DRAFT_3507 and EX28DRAFT_3508 are separated by 185 nucleotides EX28DRAFT_3502: EX28DRAFT_3502 - Amidases related to nicotinamidase, at 166,079 to 166,765 _3502 EX28DRAFT_3503: EX28DRAFT_3503 - XapX domain, at 166,827 to 167,048 _3503 EX28DRAFT_3504: EX28DRAFT_3504 - XapX domain, at 167,045 to 167,305 _3504 EX28DRAFT_3505: EX28DRAFT_3505 - Response regulator receiver domain, at 167,329 to 167,709 _3505 EX28DRAFT_3506: EX28DRAFT_3506 - PAS domain S-box, at 167,719 to 173,301 _3506 EX28DRAFT_3507: EX28DRAFT_3507 - Response regulator, at 173,323 to 173,922 _3507 EX28DRAFT_3508: EX28DRAFT_3508 - Lactoylglutathione lyase and related lyases, at 174,108 to 174,494 _3508 Position (kb) 167 168 169 170 171 172 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 166.878 kb on + strand, within EX28DRAFT_3503at 166.878 kb on + strand, within EX28DRAFT_3503at 166.878 kb on + strand, within EX28DRAFT_3503at 166.878 kb on + strand, within EX28DRAFT_3503at 166.879 kb on - strand, within EX28DRAFT_3503at 166.879 kb on - strand, within EX28DRAFT_3503at 167.059 kb on - strandat 167.091 kb on + strand, within EX28DRAFT_3504at 167.097 kb on - strand, within EX28DRAFT_3504at 167.200 kb on - strand, within EX28DRAFT_3504at 167.219 kb on - strand, within EX28DRAFT_3504at 167.425 kb on - strand, within EX28DRAFT_3505at 167.444 kb on + strand, within EX28DRAFT_3505at 167.528 kb on + strand, within EX28DRAFT_3505at 167.529 kb on - strand, within EX28DRAFT_3505at 167.578 kb on - strand, within EX28DRAFT_3505at 167.619 kb on + strand, within EX28DRAFT_3505at 167.679 kb on + strandat 167.680 kb on - strandat 167.798 kb on - strandat 168.026 kb on - strandat 168.177 kb on + strandat 168.178 kb on - strandat 168.289 kb on + strand, within EX28DRAFT_3506at 168.289 kb on + strand, within EX28DRAFT_3506at 168.289 kb on + strand, within EX28DRAFT_3506at 168.290 kb on - strand, within EX28DRAFT_3506at 168.290 kb on - strand, within EX28DRAFT_3506at 168.290 kb on - strand, within EX28DRAFT_3506at 168.291 kb on + strand, within EX28DRAFT_3506at 168.291 kb on + strand, within EX28DRAFT_3506at 168.292 kb on - strand, within EX28DRAFT_3506at 168.292 kb on - strand, within EX28DRAFT_3506at 168.292 kb on - strand, within EX28DRAFT_3506at 168.350 kb on - strand, within EX28DRAFT_3506at 168.885 kb on - strand, within EX28DRAFT_3506at 168.887 kb on + strand, within EX28DRAFT_3506at 168.888 kb on - strand, within EX28DRAFT_3506at 169.095 kb on + strand, within EX28DRAFT_3506at 169.096 kb on - strand, within EX28DRAFT_3506at 169.192 kb on - strand, within EX28DRAFT_3506at 169.202 kb on - strand, within EX28DRAFT_3506at 169.202 kb on - strand, within EX28DRAFT_3506at 169.202 kb on - strand, within EX28DRAFT_3506at 169.385 kb on + strand, within EX28DRAFT_3506at 169.516 kb on + strand, within EX28DRAFT_3506at 169.516 kb on + strand, within EX28DRAFT_3506at 169.517 kb on - strand, within EX28DRAFT_3506at 169.517 kb on - strand, within EX28DRAFT_3506at 169.534 kb on + strand, within EX28DRAFT_3506at 169.564 kb on + strand, within EX28DRAFT_3506at 169.718 kb on - strand, within EX28DRAFT_3506at 169.840 kb on - strand, within EX28DRAFT_3506at 170.042 kb on - strand, within EX28DRAFT_3506at 170.091 kb on + strand, within EX28DRAFT_3506at 170.230 kb on + strand, within EX28DRAFT_3506at 170.230 kb on + strand, within EX28DRAFT_3506at 170.231 kb on - strand, within EX28DRAFT_3506at 170.231 kb on - strand, within EX28DRAFT_3506at 170.444 kb on - strand, within EX28DRAFT_3506at 170.728 kb on - strand, within EX28DRAFT_3506at 170.817 kb on + strand, within EX28DRAFT_3506at 170.889 kb on + strand, within EX28DRAFT_3506at 170.939 kb on - strand, within EX28DRAFT_3506at 171.091 kb on - strand, within EX28DRAFT_3506at 171.191 kb on - strand, within EX28DRAFT_3506at 171.268 kb on + strand, within EX28DRAFT_3506at 171.318 kb on + strand, within EX28DRAFT_3506at 171.386 kb on - strand, within EX28DRAFT_3506at 171.696 kb on + strand, within EX28DRAFT_3506at 171.710 kb on + strand, within EX28DRAFT_3506at 172.040 kb on - strand, within EX28DRAFT_3506at 172.144 kb on + strand, within EX28DRAFT_3506at 172.298 kb on - strand, within EX28DRAFT_3506at 172.474 kb on + strand, within EX28DRAFT_3506at 172.552 kb on - strand, within EX28DRAFT_3506at 172.858 kb on + strandat 172.859 kb on - strandat 172.872 kb on + strandat 172.951 kb on - strandat 172.951 kb on - strandat 173.153 kb on - strandat 173.325 kb on - strandat 173.539 kb on - strand, within EX28DRAFT_3507at 173.906 kb on + strandat 173.906 kb on + strandat 173.906 kb on + strandat 173.906 kb on + strandat 173.906 kb on + strandat 173.991 kb on + strandat 174.033 kb on + strandat 174.033 kb on + strandat 174.039 kb on + strandat 174.039 kb on + strandat 174.064 kb on - strandat 174.064 kb on - strandat 174.071 kb on + strandat 174.071 kb on + strandat 174.071 kb on + strandat 174.109 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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166,878 + EX28DRAFT_3503 0.23 -1.3
166,878 + EX28DRAFT_3503 0.23 -1.8
166,878 + EX28DRAFT_3503 0.23 -0.2
166,878 + EX28DRAFT_3503 0.23 +0.1
166,879 - EX28DRAFT_3503 0.23 +1.4
166,879 - EX28DRAFT_3503 0.23 +0.9
167,059 - -0.8
167,091 + EX28DRAFT_3504 0.18 +0.4
167,097 - EX28DRAFT_3504 0.20 -1.2
167,200 - EX28DRAFT_3504 0.59 +0.9
167,219 - EX28DRAFT_3504 0.67 +0.1
167,425 - EX28DRAFT_3505 0.25 +0.5
167,444 + EX28DRAFT_3505 0.30 -1.4
167,528 + EX28DRAFT_3505 0.52 -0.1
167,529 - EX28DRAFT_3505 0.52 -1.4
167,578 - EX28DRAFT_3505 0.65 -0.0
167,619 + EX28DRAFT_3505 0.76 +0.4
167,679 + -0.2
167,680 - -0.1
167,798 - +0.4
168,026 - -0.2
168,177 + -0.1
168,178 - -1.3
168,289 + EX28DRAFT_3506 0.10 -0.5
168,289 + EX28DRAFT_3506 0.10 +0.7
168,289 + EX28DRAFT_3506 0.10 +2.0
168,290 - EX28DRAFT_3506 0.10 -2.6
168,290 - EX28DRAFT_3506 0.10 -0.2
168,290 - EX28DRAFT_3506 0.10 -0.1
168,291 + EX28DRAFT_3506 0.10 -2.1
168,291 + EX28DRAFT_3506 0.10 -1.0
168,292 - EX28DRAFT_3506 0.10 +0.6
168,292 - EX28DRAFT_3506 0.10 +1.2
168,292 - EX28DRAFT_3506 0.10 -2.1
168,350 - EX28DRAFT_3506 0.11 -1.8
168,885 - EX28DRAFT_3506 0.21 -0.5
168,887 + EX28DRAFT_3506 0.21 +0.7
168,888 - EX28DRAFT_3506 0.21 -0.6
169,095 + EX28DRAFT_3506 0.25 -0.8
169,096 - EX28DRAFT_3506 0.25 +1.3
169,192 - EX28DRAFT_3506 0.26 +0.2
169,202 - EX28DRAFT_3506 0.27 -0.2
169,202 - EX28DRAFT_3506 0.27 +2.1
169,202 - EX28DRAFT_3506 0.27 +0.4
169,385 + EX28DRAFT_3506 0.30 -3.0
169,516 + EX28DRAFT_3506 0.32 -2.0
169,516 + EX28DRAFT_3506 0.32 +0.7
169,517 - EX28DRAFT_3506 0.32 +0.6
169,517 - EX28DRAFT_3506 0.32 -2.2
169,534 + EX28DRAFT_3506 0.33 +0.6
169,564 + EX28DRAFT_3506 0.33 +0.1
169,718 - EX28DRAFT_3506 0.36 -1.9
169,840 - EX28DRAFT_3506 0.38 -0.2
170,042 - EX28DRAFT_3506 0.42 +1.5
170,091 + EX28DRAFT_3506 0.42 +1.3
170,230 + EX28DRAFT_3506 0.45 +0.8
170,230 + EX28DRAFT_3506 0.45 +0.2
170,231 - EX28DRAFT_3506 0.45 +0.0
170,231 - EX28DRAFT_3506 0.45 -1.6
170,444 - EX28DRAFT_3506 0.49 -0.2
170,728 - EX28DRAFT_3506 0.54 +0.4
170,817 + EX28DRAFT_3506 0.55 +0.8
170,889 + EX28DRAFT_3506 0.57 +1.0
170,939 - EX28DRAFT_3506 0.58 -0.8
171,091 - EX28DRAFT_3506 0.60 +0.8
171,191 - EX28DRAFT_3506 0.62 +3.5
171,268 + EX28DRAFT_3506 0.64 +1.0
171,318 + EX28DRAFT_3506 0.64 -0.9
171,386 - EX28DRAFT_3506 0.66 -2.1
171,696 + EX28DRAFT_3506 0.71 -0.3
171,710 + EX28DRAFT_3506 0.71 -0.7
172,040 - EX28DRAFT_3506 0.77 +1.9
172,144 + EX28DRAFT_3506 0.79 +0.1
172,298 - EX28DRAFT_3506 0.82 +0.3
172,474 + EX28DRAFT_3506 0.85 -1.0
172,552 - EX28DRAFT_3506 0.87 -0.4
172,858 + +3.2
172,859 - +1.5
172,872 + +1.2
172,951 - +0.2
172,951 - +0.1
173,153 - +0.3
173,325 - +0.8
173,539 - EX28DRAFT_3507 0.36 -0.9
173,906 + +0.4
173,906 + +0.4
173,906 + -0.9
173,906 + +0.1
173,906 + -0.0
173,991 + -0.2
174,033 + -0.6
174,033 + +0.7
174,039 + -0.1
174,039 + +1.2
174,064 - -0.9
174,064 - -1.3
174,071 + -0.1
174,071 + -1.0
174,071 + -2.4
174,109 + -0.2

Or see this region's nucleotide sequence