Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3408 and EX28DRAFT_3409 are separated by 44 nucleotides EX28DRAFT_3409 and EX28DRAFT_3410 overlap by 53 nucleotides EX28DRAFT_3410 and EX28DRAFT_3411 overlap by 4 nucleotides EX28DRAFT_3411 and EX28DRAFT_3412 are separated by 224 nucleotides
EX28DRAFT_3408: EX28DRAFT_3408 - Uncharacterized conserved protein, at 80,818 to 81,162
_3408
EX28DRAFT_3409: EX28DRAFT_3409 - hypothetical protein, at 81,207 to 81,530
_3409
EX28DRAFT_3410: EX28DRAFT_3410 - hypothetical protein, at 81,478 to 81,948
_3410
EX28DRAFT_3411: EX28DRAFT_3411 - hypothetical protein, at 81,945 to 82,529
_3411
EX28DRAFT_3412: EX28DRAFT_3412 - Inorganic pyrophosphatase, at 82,754 to 83,284
_3412
Position (kb) 81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 81.089 kb on - strand, within EX28DRAFT_3408 at 81.094 kb on + strand, within EX28DRAFT_3408 at 81.095 kb on - strand, within EX28DRAFT_3408 at 81.135 kb on + strand at 81.266 kb on - strand, within EX28DRAFT_3409 at 81.318 kb on + strand, within EX28DRAFT_3409 at 81.318 kb on + strand, within EX28DRAFT_3409 at 81.329 kb on + strand, within EX28DRAFT_3409 at 81.380 kb on - strand, within EX28DRAFT_3409 at 81.402 kb on + strand, within EX28DRAFT_3409 at 81.402 kb on + strand, within EX28DRAFT_3409 at 81.403 kb on - strand, within EX28DRAFT_3409 at 81.403 kb on - strand, within EX28DRAFT_3409 at 81.406 kb on + strand, within EX28DRAFT_3409 at 81.406 kb on + strand, within EX28DRAFT_3409 at 81.407 kb on - strand, within EX28DRAFT_3409 at 81.505 kb on - strand at 81.532 kb on + strand, within EX28DRAFT_3410 at 81.533 kb on - strand, within EX28DRAFT_3410 at 82.095 kb on - strand, within EX28DRAFT_3411 at 82.141 kb on + strand, within EX28DRAFT_3411 at 82.214 kb on + strand, within EX28DRAFT_3411 at 82.277 kb on + strand, within EX28DRAFT_3411 at 82.439 kb on + strand, within EX28DRAFT_3411 at 82.530 kb on - strand at 82.755 kb on + strand at 83.505 kb on + strand at 83.506 kb on - strand at 83.522 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 81,089 - EX28DRAFT_3408 0.79 +0.3 81,094 + EX28DRAFT_3408 0.80 -1.0 81,095 - EX28DRAFT_3408 0.80 -3.5 81,135 + -2.3 81,266 - EX28DRAFT_3409 0.18 -0.7 81,318 + EX28DRAFT_3409 0.34 -1.5 81,318 + EX28DRAFT_3409 0.34 -0.0 81,329 + EX28DRAFT_3409 0.38 -0.1 81,380 - EX28DRAFT_3409 0.53 +0.2 81,402 + EX28DRAFT_3409 0.60 -0.5 81,402 + EX28DRAFT_3409 0.60 +0.6 81,403 - EX28DRAFT_3409 0.60 -0.3 81,403 - EX28DRAFT_3409 0.60 +1.2 81,406 + EX28DRAFT_3409 0.61 -0.3 81,406 + EX28DRAFT_3409 0.61 -0.0 81,407 - EX28DRAFT_3409 0.62 +0.2 81,505 - -0.4 81,532 + EX28DRAFT_3410 0.11 -0.9 81,533 - EX28DRAFT_3410 0.12 +0.9 82,095 - EX28DRAFT_3411 0.26 -1.8 82,141 + EX28DRAFT_3411 0.34 -0.2 82,214 + EX28DRAFT_3411 0.46 -1.3 82,277 + EX28DRAFT_3411 0.57 +0.8 82,439 + EX28DRAFT_3411 0.84 -1.1 82,530 - -0.8 82,755 + +0.3 83,505 + +1.5 83,506 - +0.5 83,522 + -3.1
Or see this region's nucleotide sequence