Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3402 and EX28DRAFT_3403 are separated by 324 nucleotides EX28DRAFT_3403 and EX28DRAFT_3404 are separated by 72 nucleotides EX28DRAFT_3404 and EX28DRAFT_3405 are separated by 253 nucleotides
EX28DRAFT_3402: EX28DRAFT_3402 - conserved hypothetical protein YtfJ-family, TIGR01626, at 71,691 to 72,248
_3402
EX28DRAFT_3403: EX28DRAFT_3403 - Protein of unknown function (DUF1107), at 72,573 to 72,779
_3403
EX28DRAFT_3404: EX28DRAFT_3404 - Hemolysins and related proteins containing CBS domains, at 72,852 to 74,189
_3404
EX28DRAFT_3405: EX28DRAFT_3405 - methionine-S-sulfoxide reductase, at 74,443 to 75,084
_3405
Position (kb) 72
73
74
75 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 72.050 kb on + strand, within EX28DRAFT_3402 at 72.051 kb on - strand, within EX28DRAFT_3402 at 72.051 kb on - strand, within EX28DRAFT_3402 at 72.089 kb on + strand, within EX28DRAFT_3402 at 72.103 kb on + strand, within EX28DRAFT_3402 at 72.104 kb on - strand, within EX28DRAFT_3402 at 72.104 kb on - strand, within EX28DRAFT_3402 at 72.108 kb on - strand, within EX28DRAFT_3402 at 72.114 kb on - strand, within EX28DRAFT_3402 at 72.233 kb on + strand at 72.233 kb on + strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.240 kb on + strand at 72.299 kb on + strand at 72.299 kb on + strand at 72.300 kb on - strand at 72.300 kb on - strand at 72.300 kb on - strand at 72.305 kb on + strand at 72.305 kb on + strand at 72.306 kb on - strand at 72.364 kb on + strand at 72.364 kb on + strand at 72.365 kb on - strand at 72.388 kb on + strand at 72.454 kb on - strand at 72.474 kb on + strand at 72.485 kb on + strand at 72.485 kb on + strand at 72.486 kb on - strand at 72.486 kb on - strand at 72.488 kb on - strand at 72.551 kb on - strand at 72.567 kb on - strand at 72.591 kb on + strand at 72.592 kb on - strand at 72.592 kb on - strand at 72.615 kb on + strand, within EX28DRAFT_3403 at 72.616 kb on - strand, within EX28DRAFT_3403 at 72.645 kb on + strand, within EX28DRAFT_3403 at 72.645 kb on + strand, within EX28DRAFT_3403 at 72.645 kb on + strand, within EX28DRAFT_3403 at 72.646 kb on - strand, within EX28DRAFT_3403 at 72.646 kb on - strand, within EX28DRAFT_3403 at 72.646 kb on - strand, within EX28DRAFT_3403 at 72.646 kb on - strand, within EX28DRAFT_3403 at 72.790 kb on - strand at 72.796 kb on + strand at 72.897 kb on + strand at 73.017 kb on - strand, within EX28DRAFT_3404 at 73.025 kb on + strand, within EX28DRAFT_3404 at 73.025 kb on + strand, within EX28DRAFT_3404 at 73.035 kb on - strand, within EX28DRAFT_3404 at 73.098 kb on + strand, within EX28DRAFT_3404 at 73.140 kb on - strand, within EX28DRAFT_3404 at 73.224 kb on - strand, within EX28DRAFT_3404 at 73.227 kb on - strand, within EX28DRAFT_3404 at 73.457 kb on + strand, within EX28DRAFT_3404 at 73.457 kb on + strand, within EX28DRAFT_3404 at 73.457 kb on + strand, within EX28DRAFT_3404 at 73.458 kb on - strand, within EX28DRAFT_3404 at 73.523 kb on + strand, within EX28DRAFT_3404 at 73.523 kb on + strand, within EX28DRAFT_3404 at 73.524 kb on - strand, within EX28DRAFT_3404 at 73.524 kb on - strand, within EX28DRAFT_3404 at 73.524 kb on - strand, within EX28DRAFT_3404 at 73.524 kb on - strand, within EX28DRAFT_3404 at 73.649 kb on - strand, within EX28DRAFT_3404 at 73.649 kb on - strand, within EX28DRAFT_3404 at 73.677 kb on - strand, within EX28DRAFT_3404 at 73.737 kb on + strand, within EX28DRAFT_3404 at 73.737 kb on + strand, within EX28DRAFT_3404 at 73.737 kb on + strand, within EX28DRAFT_3404 at 73.756 kb on + strand, within EX28DRAFT_3404 at 73.756 kb on + strand, within EX28DRAFT_3404 at 73.918 kb on + strand, within EX28DRAFT_3404 at 73.922 kb on + strand, within EX28DRAFT_3404 at 73.934 kb on + strand, within EX28DRAFT_3404 at 73.935 kb on - strand, within EX28DRAFT_3404 at 73.936 kb on + strand, within EX28DRAFT_3404 at 73.936 kb on + strand, within EX28DRAFT_3404 at 73.937 kb on - strand, within EX28DRAFT_3404 at 74.128 kb on + strand at 74.130 kb on + strand at 74.166 kb on + strand at 74.167 kb on - strand at 74.167 kb on - strand at 74.177 kb on + strand at 74.185 kb on - strand at 74.189 kb on + strand at 74.190 kb on - strand at 74.298 kb on + strand at 74.299 kb on - strand at 74.378 kb on + strand at 74.378 kb on + strand at 74.378 kb on + strand at 74.379 kb on - strand at 74.380 kb on + strand at 74.380 kb on + strand at 74.380 kb on + strand at 74.380 kb on + strand at 74.381 kb on - strand at 74.381 kb on - strand at 74.381 kb on - strand at 74.438 kb on - strand at 74.442 kb on - strand at 74.516 kb on + strand, within EX28DRAFT_3405 at 74.516 kb on + strand, within EX28DRAFT_3405 at 74.540 kb on + strand, within EX28DRAFT_3405 at 74.543 kb on + strand, within EX28DRAFT_3405 at 74.544 kb on - strand, within EX28DRAFT_3405 at 74.544 kb on - strand, within EX28DRAFT_3405 at 74.544 kb on - strand, within EX28DRAFT_3405 at 74.544 kb on - strand, within EX28DRAFT_3405 at 74.666 kb on + strand, within EX28DRAFT_3405 at 74.667 kb on - strand, within EX28DRAFT_3405 at 74.762 kb on + strand, within EX28DRAFT_3405 at 74.767 kb on - strand, within EX28DRAFT_3405 at 75.137 kb on - strand at 75.150 kb on - strand at 75.174 kb on + strand at 75.188 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 72,050 + EX28DRAFT_3402 0.64 -1.6 72,051 - EX28DRAFT_3402 0.65 -0.5 72,051 - EX28DRAFT_3402 0.65 -0.2 72,089 + EX28DRAFT_3402 0.71 -0.8 72,103 + EX28DRAFT_3402 0.74 +1.3 72,104 - EX28DRAFT_3402 0.74 -0.2 72,104 - EX28DRAFT_3402 0.74 +0.4 72,108 - EX28DRAFT_3402 0.75 +2.0 72,114 - EX28DRAFT_3402 0.76 +0.8 72,233 + -3.6 72,233 + -2.1 72,237 - -1.9 72,237 - -0.4 72,240 + -0.9 72,299 + +0.3 72,299 + -0.6 72,300 - +0.2 72,300 - -0.7 72,300 - +5.5 72,305 + +0.6 72,305 + -0.1 72,306 - +0.1 72,364 + -0.1 72,364 + -0.1 72,365 - +0.2 72,388 + +0.1 72,454 - -0.2 72,474 + -0.4 72,485 + -0.8 72,485 + -1.5 72,486 - -0.0 72,486 - -0.9 72,488 - -0.7 72,551 - -0.5 72,567 - -0.8 72,591 + +0.2 72,592 - -0.2 72,592 - +0.6 72,615 + EX28DRAFT_3403 0.20 -0.0 72,616 - EX28DRAFT_3403 0.21 +1.9 72,645 + EX28DRAFT_3403 0.35 +0.7 72,645 + EX28DRAFT_3403 0.35 +1.1 72,645 + EX28DRAFT_3403 0.35 +0.2 72,646 - EX28DRAFT_3403 0.35 -1.3 72,646 - EX28DRAFT_3403 0.35 +0.4 72,646 - EX28DRAFT_3403 0.35 -1.5 72,646 - EX28DRAFT_3403 0.35 +1.3 72,790 - -0.1 72,796 + -0.7 72,897 + -1.4 73,017 - EX28DRAFT_3404 0.12 +0.3 73,025 + EX28DRAFT_3404 0.13 +1.6 73,025 + EX28DRAFT_3404 0.13 -0.2 73,035 - EX28DRAFT_3404 0.14 -4.2 73,098 + EX28DRAFT_3404 0.18 -1.0 73,140 - EX28DRAFT_3404 0.22 -0.8 73,224 - EX28DRAFT_3404 0.28 -0.9 73,227 - EX28DRAFT_3404 0.28 -0.0 73,457 + EX28DRAFT_3404 0.45 -0.3 73,457 + EX28DRAFT_3404 0.45 +0.1 73,457 + EX28DRAFT_3404 0.45 +1.2 73,458 - EX28DRAFT_3404 0.45 +1.6 73,523 + EX28DRAFT_3404 0.50 -1.8 73,523 + EX28DRAFT_3404 0.50 +0.2 73,524 - EX28DRAFT_3404 0.50 -2.7 73,524 - EX28DRAFT_3404 0.50 -1.7 73,524 - EX28DRAFT_3404 0.50 +0.3 73,524 - EX28DRAFT_3404 0.50 -0.4 73,649 - EX28DRAFT_3404 0.60 -1.1 73,649 - EX28DRAFT_3404 0.60 -0.8 73,677 - EX28DRAFT_3404 0.62 -0.6 73,737 + EX28DRAFT_3404 0.66 -0.8 73,737 + EX28DRAFT_3404 0.66 -0.6 73,737 + EX28DRAFT_3404 0.66 -0.5 73,756 + EX28DRAFT_3404 0.68 +0.7 73,756 + EX28DRAFT_3404 0.68 -0.4 73,918 + EX28DRAFT_3404 0.80 -1.3 73,922 + EX28DRAFT_3404 0.80 +0.8 73,934 + EX28DRAFT_3404 0.81 +1.2 73,935 - EX28DRAFT_3404 0.81 +0.2 73,936 + EX28DRAFT_3404 0.81 -0.1 73,936 + EX28DRAFT_3404 0.81 +1.0 73,937 - EX28DRAFT_3404 0.81 +0.0 74,128 + -0.7 74,130 + -0.6 74,166 + -1.6 74,167 - +0.2 74,167 - +0.6 74,177 + -1.0 74,185 - +0.0 74,189 + -1.1 74,190 - -3.2 74,298 + -0.7 74,299 - -0.2 74,378 + +1.1 74,378 + -1.2 74,378 + -0.3 74,379 - -0.2 74,380 + +0.7 74,380 + +0.4 74,380 + -0.7 74,380 + +1.0 74,381 - -2.5 74,381 - +0.4 74,381 - +0.0 74,438 - +4.1 74,442 - -0.1 74,516 + EX28DRAFT_3405 0.11 -0.3 74,516 + EX28DRAFT_3405 0.11 +0.7 74,540 + EX28DRAFT_3405 0.15 -2.3 74,543 + EX28DRAFT_3405 0.16 -0.7 74,544 - EX28DRAFT_3405 0.16 -3.3 74,544 - EX28DRAFT_3405 0.16 -0.1 74,544 - EX28DRAFT_3405 0.16 +2.2 74,544 - EX28DRAFT_3405 0.16 +0.9 74,666 + EX28DRAFT_3405 0.35 -1.7 74,667 - EX28DRAFT_3405 0.35 +0.2 74,762 + EX28DRAFT_3405 0.50 -1.5 74,767 - EX28DRAFT_3405 0.50 +0.6 75,137 - -0.6 75,150 - +0.7 75,174 + -1.4 75,188 - +1.6
Or see this region's nucleotide sequence