Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3346 and EX28DRAFT_3347 are separated by 189 nucleotides EX28DRAFT_3347 and EX28DRAFT_3348 are separated by 27 nucleotides EX28DRAFT_3348 and EX28DRAFT_3349 overlap by 4 nucleotides EX28DRAFT_3349 and EX28DRAFT_3350 are separated by 138 nucleotides
EX28DRAFT_3346: EX28DRAFT_3346 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 14,814 to 15,413
_3346
EX28DRAFT_3347: EX28DRAFT_3347 - RNA, at 15,603 to 15,647
_3347
EX28DRAFT_3348: EX28DRAFT_3348 - Membrane transporters of cations and cationic drugs, at 15,675 to 15,992
_3348
EX28DRAFT_3349: EX28DRAFT_3349 - Bacterial lipocalin, at 15,989 to 16,519
_3349
EX28DRAFT_3350: EX28DRAFT_3350 - Beta-lactamase class C and other penicillin binding proteins, at 16,658 to 17,800
_3350
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 15.222 kb on - strand, within EX28DRAFT_3346 at 15.322 kb on + strand, within EX28DRAFT_3346 at 15.322 kb on + strand, within EX28DRAFT_3346 at 15.413 kb on + strand at 15.471 kb on + strand at 15.471 kb on + strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.514 kb on - strand at 15.523 kb on - strand at 15.534 kb on + strand at 15.584 kb on + strand at 15.654 kb on + strand at 15.654 kb on + strand at 15.655 kb on - strand at 15.657 kb on + strand at 15.657 kb on + strand at 15.658 kb on - strand at 15.658 kb on - strand at 15.695 kb on + strand at 15.719 kb on - strand, within EX28DRAFT_3348 at 15.775 kb on + strand, within EX28DRAFT_3348 at 15.775 kb on + strand, within EX28DRAFT_3348 at 15.800 kb on + strand, within EX28DRAFT_3348 at 15.800 kb on + strand, within EX28DRAFT_3348 at 15.800 kb on + strand, within EX28DRAFT_3348 at 15.801 kb on - strand, within EX28DRAFT_3348 at 15.812 kb on - strand, within EX28DRAFT_3348 at 15.849 kb on + strand, within EX28DRAFT_3348 at 16.081 kb on + strand, within EX28DRAFT_3349 at 16.173 kb on + strand, within EX28DRAFT_3349 at 16.283 kb on - strand, within EX28DRAFT_3349 at 16.329 kb on + strand, within EX28DRAFT_3349 at 16.329 kb on + strand, within EX28DRAFT_3349 at 16.349 kb on + strand, within EX28DRAFT_3349 at 16.350 kb on - strand, within EX28DRAFT_3349 at 16.389 kb on + strand, within EX28DRAFT_3349 at 16.390 kb on - strand, within EX28DRAFT_3349 at 16.463 kb on - strand, within EX28DRAFT_3349 at 16.519 kb on + strand at 16.519 kb on + strand at 16.520 kb on - strand at 16.545 kb on + strand at 16.552 kb on - strand at 16.656 kb on + strand at 16.656 kb on + strand at 16.660 kb on - strand at 16.660 kb on - strand at 16.768 kb on - strand at 16.768 kb on - strand at 16.768 kb on - strand at 16.768 kb on - strand at 16.798 kb on + strand, within EX28DRAFT_3350 at 16.874 kb on - strand, within EX28DRAFT_3350 at 16.919 kb on - strand, within EX28DRAFT_3350 at 16.944 kb on + strand, within EX28DRAFT_3350 at 16.945 kb on - strand, within EX28DRAFT_3350 at 16.945 kb on - strand, within EX28DRAFT_3350 at 17.080 kb on - strand, within EX28DRAFT_3350 at 17.145 kb on + strand, within EX28DRAFT_3350 at 17.146 kb on - strand, within EX28DRAFT_3350 at 17.182 kb on + strand, within EX28DRAFT_3350 at 17.182 kb on + strand, within EX28DRAFT_3350 at 17.182 kb on + strand, within EX28DRAFT_3350 at 17.183 kb on - strand, within EX28DRAFT_3350 at 17.183 kb on - strand, within EX28DRAFT_3350 at 17.183 kb on - strand, within EX28DRAFT_3350 at 17.233 kb on - strand, within EX28DRAFT_3350 at 17.233 kb on - strand, within EX28DRAFT_3350 at 17.233 kb on - strand, within EX28DRAFT_3350 at 17.233 kb on - strand, within EX28DRAFT_3350 at 17.337 kb on + strand, within EX28DRAFT_3350 at 17.406 kb on + strand, within EX28DRAFT_3350 at 17.406 kb on + strand, within EX28DRAFT_3350 at 17.406 kb on + strand, within EX28DRAFT_3350 at 17.406 kb on + strand, within EX28DRAFT_3350 at 17.406 kb on + strand, within EX28DRAFT_3350 at 17.407 kb on - strand, within EX28DRAFT_3350 at 17.493 kb on - strand, within EX28DRAFT_3350
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 15,222 - EX28DRAFT_3346 0.68 +0.3 15,322 + EX28DRAFT_3346 0.85 -1.5 15,322 + EX28DRAFT_3346 0.85 -0.6 15,413 + +3.3 15,471 + -1.4 15,471 + -0.1 15,492 - +0.2 15,492 - -0.2 15,514 - +0.2 15,523 - +0.2 15,534 + -2.1 15,584 + +0.3 15,654 + -0.3 15,654 + -0.0 15,655 - +0.3 15,657 + -0.4 15,657 + -0.4 15,658 - -0.0 15,658 - +0.4 15,695 + -0.9 15,719 - EX28DRAFT_3348 0.14 -0.0 15,775 + EX28DRAFT_3348 0.31 -2.3 15,775 + EX28DRAFT_3348 0.31 +0.6 15,800 + EX28DRAFT_3348 0.39 +1.7 15,800 + EX28DRAFT_3348 0.39 +2.0 15,800 + EX28DRAFT_3348 0.39 -0.5 15,801 - EX28DRAFT_3348 0.40 -0.0 15,812 - EX28DRAFT_3348 0.43 -0.5 15,849 + EX28DRAFT_3348 0.55 +0.6 16,081 + EX28DRAFT_3349 0.17 -1.0 16,173 + EX28DRAFT_3349 0.35 +0.5 16,283 - EX28DRAFT_3349 0.55 -0.4 16,329 + EX28DRAFT_3349 0.64 -0.9 16,329 + EX28DRAFT_3349 0.64 +0.6 16,349 + EX28DRAFT_3349 0.68 -0.9 16,350 - EX28DRAFT_3349 0.68 -1.3 16,389 + EX28DRAFT_3349 0.75 +0.5 16,390 - EX28DRAFT_3349 0.76 +0.0 16,463 - EX28DRAFT_3349 0.89 -0.8 16,519 + +0.2 16,519 + -0.4 16,520 - -2.5 16,545 + +0.5 16,552 - +0.6 16,656 + +0.7 16,656 + +0.3 16,660 - -0.8 16,660 - -0.6 16,768 - +1.3 16,768 - +1.6 16,768 - +0.2 16,768 - -0.2 16,798 + EX28DRAFT_3350 0.12 -0.8 16,874 - EX28DRAFT_3350 0.19 +0.2 16,919 - EX28DRAFT_3350 0.23 -1.6 16,944 + EX28DRAFT_3350 0.25 +0.8 16,945 - EX28DRAFT_3350 0.25 -0.4 16,945 - EX28DRAFT_3350 0.25 +0.6 17,080 - EX28DRAFT_3350 0.37 -0.1 17,145 + EX28DRAFT_3350 0.43 -1.0 17,146 - EX28DRAFT_3350 0.43 +0.6 17,182 + EX28DRAFT_3350 0.46 +1.0 17,182 + EX28DRAFT_3350 0.46 -0.1 17,182 + EX28DRAFT_3350 0.46 -1.1 17,183 - EX28DRAFT_3350 0.46 +1.9 17,183 - EX28DRAFT_3350 0.46 +0.7 17,183 - EX28DRAFT_3350 0.46 +0.5 17,233 - EX28DRAFT_3350 0.50 +0.6 17,233 - EX28DRAFT_3350 0.50 +1.5 17,233 - EX28DRAFT_3350 0.50 -3.4 17,233 - EX28DRAFT_3350 0.50 -0.4 17,337 + EX28DRAFT_3350 0.59 +1.2 17,406 + EX28DRAFT_3350 0.65 -0.5 17,406 + EX28DRAFT_3350 0.65 +0.6 17,406 + EX28DRAFT_3350 0.65 +0.3 17,406 + EX28DRAFT_3350 0.65 -0.6 17,406 + EX28DRAFT_3350 0.65 -1.6 17,407 - EX28DRAFT_3350 0.66 +0.6 17,493 - EX28DRAFT_3350 0.73 -0.5
Or see this region's nucleotide sequence