Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3340 and EX28DRAFT_3341 are separated by 134 nucleotides EX28DRAFT_3341 and EX28DRAFT_3342 are separated by 66 nucleotides
EX28DRAFT_3340: EX28DRAFT_3340 - chaperonin GroL, at 10,498 to 12,141
_3340
EX28DRAFT_3341: EX28DRAFT_3341 - Domain of unknown function (DUF4156), at 12,276 to 12,629
_3341
EX28DRAFT_3342: EX28DRAFT_3342 - EF-P beta-lysylation protein EpmB, at 12,696 to 13,724
_3342
Position (kb) 12
13 Strain fitness (log2 ratio) -2
-1
0
1 at 12.139 kb on + strand at 12.217 kb on + strand at 12.218 kb on - strand at 12.224 kb on - strand at 12.224 kb on - strand at 12.231 kb on - strand at 12.244 kb on + strand at 12.244 kb on + strand at 12.245 kb on - strand at 12.273 kb on - strand at 12.273 kb on - strand at 12.284 kb on - strand at 12.387 kb on - strand, within EX28DRAFT_3341 at 12.387 kb on - strand, within EX28DRAFT_3341 at 12.387 kb on - strand, within EX28DRAFT_3341 at 12.438 kb on - strand, within EX28DRAFT_3341 at 12.563 kb on + strand, within EX28DRAFT_3341 at 12.564 kb on - strand, within EX28DRAFT_3341 at 12.564 kb on - strand, within EX28DRAFT_3341 at 12.564 kb on - strand, within EX28DRAFT_3341 at 12.564 kb on - strand, within EX28DRAFT_3341 at 12.612 kb on + strand at 12.614 kb on + strand at 12.614 kb on + strand at 12.615 kb on - strand at 12.673 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 12,139 + -0.9 12,217 + -0.4 12,218 - -1.9 12,224 - -0.1 12,224 - -0.2 12,231 - +1.3 12,244 + -0.3 12,244 + +0.2 12,245 - -1.1 12,273 - +0.1 12,273 - -0.2 12,284 - +0.5 12,387 - EX28DRAFT_3341 0.31 +0.4 12,387 - EX28DRAFT_3341 0.31 -0.8 12,387 - EX28DRAFT_3341 0.31 -0.1 12,438 - EX28DRAFT_3341 0.46 -1.3 12,563 + EX28DRAFT_3341 0.81 +0.0 12,564 - EX28DRAFT_3341 0.81 +0.4 12,564 - EX28DRAFT_3341 0.81 +0.6 12,564 - EX28DRAFT_3341 0.81 -2.2 12,564 - EX28DRAFT_3341 0.81 -0.9 12,612 + -0.1 12,614 + -1.2 12,614 + -0.7 12,615 - -1.1 12,673 + +0.3
Or see this region's nucleotide sequence