Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3323 and EX28DRAFT_3324 are separated by 7 nucleotides EX28DRAFT_3324 and EX28DRAFT_3325 are separated by 106 nucleotides
EX28DRAFT_3323: EX28DRAFT_3323 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 625,768 to 626,871
_3323
EX28DRAFT_3324: EX28DRAFT_3324 - ABC-type polar amino acid transport system, ATPase component, at 626,879 to 627,637
_3324
EX28DRAFT_3325: EX28DRAFT_3325 - 5S, at 627,744 to 627,840
_3325
Position (kb) 626
627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 625.927 kb on - strand, within EX28DRAFT_3323 at 626.032 kb on + strand, within EX28DRAFT_3323 at 626.033 kb on - strand, within EX28DRAFT_3323 at 626.033 kb on - strand, within EX28DRAFT_3323 at 626.033 kb on - strand, within EX28DRAFT_3323 at 626.041 kb on + strand, within EX28DRAFT_3323 at 626.140 kb on + strand, within EX28DRAFT_3323 at 626.140 kb on + strand, within EX28DRAFT_3323 at 626.140 kb on + strand, within EX28DRAFT_3323 at 626.141 kb on - strand, within EX28DRAFT_3323 at 626.141 kb on - strand, within EX28DRAFT_3323 at 626.143 kb on - strand, within EX28DRAFT_3323 at 626.191 kb on + strand, within EX28DRAFT_3323 at 626.192 kb on - strand, within EX28DRAFT_3323 at 626.192 kb on - strand, within EX28DRAFT_3323 at 626.403 kb on + strand, within EX28DRAFT_3323 at 626.403 kb on + strand, within EX28DRAFT_3323 at 626.404 kb on - strand, within EX28DRAFT_3323 at 626.500 kb on + strand, within EX28DRAFT_3323 at 626.500 kb on + strand, within EX28DRAFT_3323 at 626.501 kb on - strand, within EX28DRAFT_3323 at 626.516 kb on + strand, within EX28DRAFT_3323 at 626.516 kb on + strand, within EX28DRAFT_3323 at 626.517 kb on - strand, within EX28DRAFT_3323 at 626.712 kb on + strand, within EX28DRAFT_3323 at 626.770 kb on + strand at 626.771 kb on - strand at 626.889 kb on + strand at 626.889 kb on + strand at 626.890 kb on - strand at 626.890 kb on - strand at 626.893 kb on + strand at 626.893 kb on + strand at 626.893 kb on + strand at 626.893 kb on + strand at 626.894 kb on - strand at 626.894 kb on - strand at 626.894 kb on - strand at 626.918 kb on - strand at 626.935 kb on + strand at 627.049 kb on + strand, within EX28DRAFT_3324 at 627.049 kb on + strand, within EX28DRAFT_3324 at 627.049 kb on + strand, within EX28DRAFT_3324 at 627.052 kb on + strand, within EX28DRAFT_3324 at 627.053 kb on - strand, within EX28DRAFT_3324 at 627.053 kb on - strand, within EX28DRAFT_3324 at 627.136 kb on - strand, within EX28DRAFT_3324 at 627.136 kb on - strand, within EX28DRAFT_3324 at 627.170 kb on - strand, within EX28DRAFT_3324 at 627.205 kb on + strand, within EX28DRAFT_3324 at 627.206 kb on - strand, within EX28DRAFT_3324 at 627.206 kb on - strand, within EX28DRAFT_3324 at 627.269 kb on + strand, within EX28DRAFT_3324 at 627.269 kb on + strand, within EX28DRAFT_3324 at 627.282 kb on + strand, within EX28DRAFT_3324 at 627.282 kb on + strand, within EX28DRAFT_3324 at 627.282 kb on + strand, within EX28DRAFT_3324 at 627.282 kb on + strand, within EX28DRAFT_3324 at 627.283 kb on - strand, within EX28DRAFT_3324 at 627.283 kb on - strand, within EX28DRAFT_3324 at 627.283 kb on - strand, within EX28DRAFT_3324 at 627.283 kb on - strand, within EX28DRAFT_3324 at 627.283 kb on - strand, within EX28DRAFT_3324 at 627.301 kb on + strand, within EX28DRAFT_3324 at 627.302 kb on - strand, within EX28DRAFT_3324 at 627.305 kb on - strand, within EX28DRAFT_3324 at 627.737 kb on - strand at 627.737 kb on - strand at 627.737 kb on - strand at 627.737 kb on - strand at 627.737 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 625,927 - EX28DRAFT_3323 0.14 -1.2 626,032 + EX28DRAFT_3323 0.24 -0.9 626,033 - EX28DRAFT_3323 0.24 +0.6 626,033 - EX28DRAFT_3323 0.24 -2.2 626,033 - EX28DRAFT_3323 0.24 -2.5 626,041 + EX28DRAFT_3323 0.25 +1.3 626,140 + EX28DRAFT_3323 0.34 -0.0 626,140 + EX28DRAFT_3323 0.34 -1.6 626,140 + EX28DRAFT_3323 0.34 -3.3 626,141 - EX28DRAFT_3323 0.34 +0.6 626,141 - EX28DRAFT_3323 0.34 -2.0 626,143 - EX28DRAFT_3323 0.34 +0.1 626,191 + EX28DRAFT_3323 0.38 +2.1 626,192 - EX28DRAFT_3323 0.38 -0.6 626,192 - EX28DRAFT_3323 0.38 -0.2 626,403 + EX28DRAFT_3323 0.58 -0.1 626,403 + EX28DRAFT_3323 0.58 -1.5 626,404 - EX28DRAFT_3323 0.58 -2.1 626,500 + EX28DRAFT_3323 0.66 +0.8 626,500 + EX28DRAFT_3323 0.66 -0.8 626,501 - EX28DRAFT_3323 0.66 -1.3 626,516 + EX28DRAFT_3323 0.68 +0.1 626,516 + EX28DRAFT_3323 0.68 -3.2 626,517 - EX28DRAFT_3323 0.68 -1.5 626,712 + EX28DRAFT_3323 0.86 -0.4 626,770 + -0.1 626,771 - -0.5 626,889 + -1.1 626,889 + +1.4 626,890 - -0.9 626,890 - -0.5 626,893 + +0.0 626,893 + +0.3 626,893 + -0.6 626,893 + +0.4 626,894 - +0.9 626,894 - +0.5 626,894 - -0.9 626,918 - -0.9 626,935 + -0.3 627,049 + EX28DRAFT_3324 0.22 -1.6 627,049 + EX28DRAFT_3324 0.22 -0.4 627,049 + EX28DRAFT_3324 0.22 -0.2 627,052 + EX28DRAFT_3324 0.23 -3.2 627,053 - EX28DRAFT_3324 0.23 -0.6 627,053 - EX28DRAFT_3324 0.23 -2.2 627,136 - EX28DRAFT_3324 0.34 -0.2 627,136 - EX28DRAFT_3324 0.34 -0.8 627,170 - EX28DRAFT_3324 0.38 +2.2 627,205 + EX28DRAFT_3324 0.43 -2.1 627,206 - EX28DRAFT_3324 0.43 -0.2 627,206 - EX28DRAFT_3324 0.43 -1.2 627,269 + EX28DRAFT_3324 0.51 -0.3 627,269 + EX28DRAFT_3324 0.51 -0.9 627,282 + EX28DRAFT_3324 0.53 -1.6 627,282 + EX28DRAFT_3324 0.53 -1.6 627,282 + EX28DRAFT_3324 0.53 -1.2 627,282 + EX28DRAFT_3324 0.53 -0.6 627,283 - EX28DRAFT_3324 0.53 -2.4 627,283 - EX28DRAFT_3324 0.53 +0.2 627,283 - EX28DRAFT_3324 0.53 +0.8 627,283 - EX28DRAFT_3324 0.53 +0.7 627,283 - EX28DRAFT_3324 0.53 +1.7 627,301 + EX28DRAFT_3324 0.56 -0.5 627,302 - EX28DRAFT_3324 0.56 -2.7 627,305 - EX28DRAFT_3324 0.56 -1.0 627,737 - -1.6 627,737 - +0.6 627,737 - +0.3 627,737 - -0.4 627,737 - -0.5
Or see this region's nucleotide sequence