Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3323

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3322 and EX28DRAFT_3323 are separated by 9 nucleotidesEX28DRAFT_3323 and EX28DRAFT_3324 are separated by 7 nucleotidesEX28DRAFT_3324 and EX28DRAFT_3325 are separated by 106 nucleotides EX28DRAFT_3322: EX28DRAFT_3322 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 624,577 to 625,758 _3322 EX28DRAFT_3323: EX28DRAFT_3323 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 625,768 to 626,871 _3323 EX28DRAFT_3324: EX28DRAFT_3324 - ABC-type polar amino acid transport system, ATPase component, at 626,879 to 627,637 _3324 EX28DRAFT_3325: EX28DRAFT_3325 - 5S, at 627,744 to 627,840 _3325 Position (kb) 625 626 627Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 624.831 kb on - strand, within EX28DRAFT_3322at 624.831 kb on - strand, within EX28DRAFT_3322at 624.847 kb on - strand, within EX28DRAFT_3322at 624.847 kb on - strand, within EX28DRAFT_3322at 624.870 kb on + strand, within EX28DRAFT_3322at 624.887 kb on + strand, within EX28DRAFT_3322at 624.955 kb on + strand, within EX28DRAFT_3322at 624.958 kb on - strand, within EX28DRAFT_3322at 624.958 kb on - strand, within EX28DRAFT_3322at 625.078 kb on - strand, within EX28DRAFT_3322at 625.123 kb on + strand, within EX28DRAFT_3322at 625.132 kb on - strand, within EX28DRAFT_3322at 625.182 kb on + strand, within EX28DRAFT_3322at 625.218 kb on + strand, within EX28DRAFT_3322at 625.219 kb on - strand, within EX28DRAFT_3322at 625.344 kb on - strand, within EX28DRAFT_3322at 625.346 kb on + strand, within EX28DRAFT_3322at 625.346 kb on + strand, within EX28DRAFT_3322at 625.346 kb on + strand, within EX28DRAFT_3322at 625.347 kb on - strand, within EX28DRAFT_3322at 625.387 kb on + strand, within EX28DRAFT_3322at 625.387 kb on + strand, within EX28DRAFT_3322at 625.390 kb on - strand, within EX28DRAFT_3322at 625.390 kb on - strand, within EX28DRAFT_3322at 625.684 kb on + strandat 625.684 kb on + strandat 625.685 kb on - strandat 625.726 kb on + strandat 625.727 kb on - strandat 625.729 kb on - strandat 625.729 kb on - strandat 625.739 kb on + strandat 625.764 kb on + strandat 625.764 kb on + strandat 625.765 kb on - strandat 625.781 kb on + strandat 625.866 kb on + strandat 625.927 kb on - strand, within EX28DRAFT_3323at 626.032 kb on + strand, within EX28DRAFT_3323at 626.033 kb on - strand, within EX28DRAFT_3323at 626.033 kb on - strand, within EX28DRAFT_3323at 626.033 kb on - strand, within EX28DRAFT_3323at 626.041 kb on + strand, within EX28DRAFT_3323at 626.140 kb on + strand, within EX28DRAFT_3323at 626.140 kb on + strand, within EX28DRAFT_3323at 626.140 kb on + strand, within EX28DRAFT_3323at 626.141 kb on - strand, within EX28DRAFT_3323at 626.141 kb on - strand, within EX28DRAFT_3323at 626.143 kb on - strand, within EX28DRAFT_3323at 626.191 kb on + strand, within EX28DRAFT_3323at 626.192 kb on - strand, within EX28DRAFT_3323at 626.192 kb on - strand, within EX28DRAFT_3323at 626.403 kb on + strand, within EX28DRAFT_3323at 626.403 kb on + strand, within EX28DRAFT_3323at 626.404 kb on - strand, within EX28DRAFT_3323at 626.500 kb on + strand, within EX28DRAFT_3323at 626.500 kb on + strand, within EX28DRAFT_3323at 626.501 kb on - strand, within EX28DRAFT_3323at 626.516 kb on + strand, within EX28DRAFT_3323at 626.516 kb on + strand, within EX28DRAFT_3323at 626.517 kb on - strand, within EX28DRAFT_3323at 626.712 kb on + strand, within EX28DRAFT_3323at 626.770 kb on + strandat 626.771 kb on - strandat 626.889 kb on + strandat 626.889 kb on + strandat 626.890 kb on - strandat 626.890 kb on - strandat 626.893 kb on + strandat 626.893 kb on + strandat 626.893 kb on + strandat 626.893 kb on + strandat 626.894 kb on - strandat 626.894 kb on - strandat 626.894 kb on - strandat 626.918 kb on - strandat 626.935 kb on + strandat 627.049 kb on + strand, within EX28DRAFT_3324at 627.049 kb on + strand, within EX28DRAFT_3324at 627.049 kb on + strand, within EX28DRAFT_3324at 627.052 kb on + strand, within EX28DRAFT_3324at 627.053 kb on - strand, within EX28DRAFT_3324at 627.053 kb on - strand, within EX28DRAFT_3324at 627.136 kb on - strand, within EX28DRAFT_3324at 627.136 kb on - strand, within EX28DRAFT_3324at 627.170 kb on - strand, within EX28DRAFT_3324at 627.205 kb on + strand, within EX28DRAFT_3324at 627.206 kb on - strand, within EX28DRAFT_3324at 627.206 kb on - strand, within EX28DRAFT_3324at 627.269 kb on + strand, within EX28DRAFT_3324at 627.269 kb on + strand, within EX28DRAFT_3324at 627.282 kb on + strand, within EX28DRAFT_3324at 627.282 kb on + strand, within EX28DRAFT_3324at 627.282 kb on + strand, within EX28DRAFT_3324at 627.282 kb on + strand, within EX28DRAFT_3324at 627.283 kb on - strand, within EX28DRAFT_3324at 627.283 kb on - strand, within EX28DRAFT_3324at 627.283 kb on - strand, within EX28DRAFT_3324at 627.283 kb on - strand, within EX28DRAFT_3324at 627.283 kb on - strand, within EX28DRAFT_3324at 627.301 kb on + strand, within EX28DRAFT_3324at 627.302 kb on - strand, within EX28DRAFT_3324at 627.305 kb on - strand, within EX28DRAFT_3324at 627.737 kb on - strandat 627.737 kb on - strandat 627.737 kb on - strandat 627.737 kb on - strandat 627.737 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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624,831 - EX28DRAFT_3322 0.21 +0.4
624,831 - EX28DRAFT_3322 0.21 +1.0
624,847 - EX28DRAFT_3322 0.23 -0.8
624,847 - EX28DRAFT_3322 0.23 +1.2
624,870 + EX28DRAFT_3322 0.25 -2.2
624,887 + EX28DRAFT_3322 0.26 -0.5
624,955 + EX28DRAFT_3322 0.32 -0.1
624,958 - EX28DRAFT_3322 0.32 -0.1
624,958 - EX28DRAFT_3322 0.32 -0.2
625,078 - EX28DRAFT_3322 0.42 -1.7
625,123 + EX28DRAFT_3322 0.46 -0.9
625,132 - EX28DRAFT_3322 0.47 -0.2
625,182 + EX28DRAFT_3322 0.51 -1.4
625,218 + EX28DRAFT_3322 0.54 +0.6
625,219 - EX28DRAFT_3322 0.54 -1.0
625,344 - EX28DRAFT_3322 0.65 -0.1
625,346 + EX28DRAFT_3322 0.65 -0.8
625,346 + EX28DRAFT_3322 0.65 +0.0
625,346 + EX28DRAFT_3322 0.65 -2.3
625,347 - EX28DRAFT_3322 0.65 -0.7
625,387 + EX28DRAFT_3322 0.69 +0.2
625,387 + EX28DRAFT_3322 0.69 -0.5
625,390 - EX28DRAFT_3322 0.69 -2.8
625,390 - EX28DRAFT_3322 0.69 -1.3
625,684 + -2.3
625,684 + +0.8
625,685 - -1.0
625,726 + -1.0
625,727 - +0.2
625,729 - -0.1
625,729 - -1.0
625,739 + +0.1
625,764 + +0.8
625,764 + -1.6
625,765 - -1.8
625,781 + +1.1
625,866 + -0.2
625,927 - EX28DRAFT_3323 0.14 -1.2
626,032 + EX28DRAFT_3323 0.24 -0.9
626,033 - EX28DRAFT_3323 0.24 +0.6
626,033 - EX28DRAFT_3323 0.24 -2.2
626,033 - EX28DRAFT_3323 0.24 -2.5
626,041 + EX28DRAFT_3323 0.25 +1.3
626,140 + EX28DRAFT_3323 0.34 -0.0
626,140 + EX28DRAFT_3323 0.34 -1.6
626,140 + EX28DRAFT_3323 0.34 -3.3
626,141 - EX28DRAFT_3323 0.34 +0.6
626,141 - EX28DRAFT_3323 0.34 -2.0
626,143 - EX28DRAFT_3323 0.34 +0.1
626,191 + EX28DRAFT_3323 0.38 +2.1
626,192 - EX28DRAFT_3323 0.38 -0.6
626,192 - EX28DRAFT_3323 0.38 -0.2
626,403 + EX28DRAFT_3323 0.58 -0.1
626,403 + EX28DRAFT_3323 0.58 -1.5
626,404 - EX28DRAFT_3323 0.58 -2.1
626,500 + EX28DRAFT_3323 0.66 +0.8
626,500 + EX28DRAFT_3323 0.66 -0.8
626,501 - EX28DRAFT_3323 0.66 -1.3
626,516 + EX28DRAFT_3323 0.68 +0.1
626,516 + EX28DRAFT_3323 0.68 -3.2
626,517 - EX28DRAFT_3323 0.68 -1.5
626,712 + EX28DRAFT_3323 0.86 -0.4
626,770 + -0.1
626,771 - -0.5
626,889 + -1.1
626,889 + +1.4
626,890 - -0.9
626,890 - -0.5
626,893 + +0.0
626,893 + +0.3
626,893 + -0.6
626,893 + +0.4
626,894 - +0.9
626,894 - +0.5
626,894 - -0.9
626,918 - -0.9
626,935 + -0.3
627,049 + EX28DRAFT_3324 0.22 -1.6
627,049 + EX28DRAFT_3324 0.22 -0.4
627,049 + EX28DRAFT_3324 0.22 -0.2
627,052 + EX28DRAFT_3324 0.23 -3.2
627,053 - EX28DRAFT_3324 0.23 -0.6
627,053 - EX28DRAFT_3324 0.23 -2.2
627,136 - EX28DRAFT_3324 0.34 -0.2
627,136 - EX28DRAFT_3324 0.34 -0.8
627,170 - EX28DRAFT_3324 0.38 +2.2
627,205 + EX28DRAFT_3324 0.43 -2.1
627,206 - EX28DRAFT_3324 0.43 -0.2
627,206 - EX28DRAFT_3324 0.43 -1.2
627,269 + EX28DRAFT_3324 0.51 -0.3
627,269 + EX28DRAFT_3324 0.51 -0.9
627,282 + EX28DRAFT_3324 0.53 -1.6
627,282 + EX28DRAFT_3324 0.53 -1.6
627,282 + EX28DRAFT_3324 0.53 -1.2
627,282 + EX28DRAFT_3324 0.53 -0.6
627,283 - EX28DRAFT_3324 0.53 -2.4
627,283 - EX28DRAFT_3324 0.53 +0.2
627,283 - EX28DRAFT_3324 0.53 +0.8
627,283 - EX28DRAFT_3324 0.53 +0.7
627,283 - EX28DRAFT_3324 0.53 +1.7
627,301 + EX28DRAFT_3324 0.56 -0.5
627,302 - EX28DRAFT_3324 0.56 -2.7
627,305 - EX28DRAFT_3324 0.56 -1.0
627,737 - -1.6
627,737 - +0.6
627,737 - +0.3
627,737 - -0.4
627,737 - -0.5

Or see this region's nucleotide sequence