Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3312 and EX28DRAFT_3313 are separated by 330 nucleotides EX28DRAFT_3313 and EX28DRAFT_3314 are separated by 23 nucleotides EX28DRAFT_3314 and EX28DRAFT_3315 are separated by 177 nucleotides EX28DRAFT_3315 and EX28DRAFT_3316 are separated by 139 nucleotides
EX28DRAFT_3312: EX28DRAFT_3312 - Carbonic anhydrase, at 612,276 to 613,019
_3312
EX28DRAFT_3313: EX28DRAFT_3313 - putative TIM-barrel protein, nifR3 family, at 613,350 to 614,315
_3313
EX28DRAFT_3314: EX28DRAFT_3314 - Factor for inversion stimulation Fis, transcriptional activator, at 614,339 to 614,635
_3314
EX28DRAFT_3315: EX28DRAFT_3315 - Protein of unknown function (DUF2556), at 614,813 to 614,977
_3315
EX28DRAFT_3316: EX28DRAFT_3316 - diguanylate cyclase (GGDEF) domain, at 615,117 to 617,198
_3316
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 612.357 kb on + strand, within EX28DRAFT_3312 at 612.358 kb on - strand, within EX28DRAFT_3312 at 612.444 kb on - strand, within EX28DRAFT_3312 at 612.493 kb on - strand, within EX28DRAFT_3312 at 612.530 kb on + strand, within EX28DRAFT_3312 at 612.531 kb on - strand, within EX28DRAFT_3312 at 612.555 kb on - strand, within EX28DRAFT_3312 at 612.572 kb on + strand, within EX28DRAFT_3312 at 612.572 kb on + strand, within EX28DRAFT_3312 at 612.573 kb on - strand, within EX28DRAFT_3312 at 612.582 kb on - strand, within EX28DRAFT_3312 at 612.598 kb on + strand, within EX28DRAFT_3312 at 612.598 kb on + strand, within EX28DRAFT_3312 at 612.599 kb on - strand, within EX28DRAFT_3312 at 612.638 kb on - strand, within EX28DRAFT_3312 at 612.678 kb on - strand, within EX28DRAFT_3312 at 612.745 kb on + strand, within EX28DRAFT_3312 at 612.837 kb on - strand, within EX28DRAFT_3312 at 612.844 kb on - strand, within EX28DRAFT_3312 at 612.904 kb on + strand, within EX28DRAFT_3312 at 612.905 kb on - strand, within EX28DRAFT_3312 at 612.905 kb on - strand, within EX28DRAFT_3312 at 612.908 kb on + strand, within EX28DRAFT_3312 at 612.908 kb on + strand, within EX28DRAFT_3312 at 612.908 kb on + strand, within EX28DRAFT_3312 at 612.971 kb on + strand at 612.972 kb on - strand at 613.161 kb on + strand at 613.254 kb on - strand at 613.308 kb on + strand at 613.310 kb on + strand at 613.331 kb on + strand at 613.406 kb on + strand at 613.409 kb on + strand at 613.628 kb on + strand, within EX28DRAFT_3313 at 613.757 kb on + strand, within EX28DRAFT_3313 at 613.789 kb on + strand, within EX28DRAFT_3313 at 613.957 kb on + strand, within EX28DRAFT_3313 at 613.992 kb on + strand, within EX28DRAFT_3313 at 613.992 kb on + strand, within EX28DRAFT_3313 at 613.994 kb on + strand, within EX28DRAFT_3313 at 614.067 kb on + strand, within EX28DRAFT_3313 at 614.257 kb on + strand at 614.272 kb on + strand at 614.499 kb on + strand, within EX28DRAFT_3314 at 614.637 kb on - strand at 614.647 kb on + strand at 614.726 kb on + strand at 614.727 kb on - strand at 614.768 kb on + strand at 614.768 kb on + strand at 614.769 kb on - strand at 614.771 kb on - strand at 614.771 kb on - strand at 614.817 kb on + strand at 614.821 kb on + strand at 614.822 kb on - strand at 614.822 kb on - strand at 614.822 kb on - strand at 614.822 kb on - strand at 614.826 kb on - strand at 614.895 kb on + strand, within EX28DRAFT_3315 at 614.926 kb on + strand, within EX28DRAFT_3315 at 615.060 kb on - strand at 615.106 kb on + strand at 615.132 kb on + strand at 615.132 kb on + strand at 615.132 kb on + strand at 615.183 kb on + strand at 615.184 kb on - strand at 615.260 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 612,357 + EX28DRAFT_3312 0.11 -3.1 612,358 - EX28DRAFT_3312 0.11 +0.7 612,444 - EX28DRAFT_3312 0.23 +0.8 612,493 - EX28DRAFT_3312 0.29 -0.6 612,530 + EX28DRAFT_3312 0.34 -0.6 612,531 - EX28DRAFT_3312 0.34 -0.7 612,555 - EX28DRAFT_3312 0.38 +0.4 612,572 + EX28DRAFT_3312 0.40 +0.2 612,572 + EX28DRAFT_3312 0.40 +1.0 612,573 - EX28DRAFT_3312 0.40 +0.5 612,582 - EX28DRAFT_3312 0.41 -2.0 612,598 + EX28DRAFT_3312 0.43 -0.6 612,598 + EX28DRAFT_3312 0.43 +0.1 612,599 - EX28DRAFT_3312 0.43 +0.4 612,638 - EX28DRAFT_3312 0.49 +0.7 612,678 - EX28DRAFT_3312 0.54 -0.3 612,745 + EX28DRAFT_3312 0.63 +0.2 612,837 - EX28DRAFT_3312 0.75 -0.8 612,844 - EX28DRAFT_3312 0.76 -1.5 612,904 + EX28DRAFT_3312 0.84 +0.3 612,905 - EX28DRAFT_3312 0.85 +0.4 612,905 - EX28DRAFT_3312 0.85 +1.0 612,908 + EX28DRAFT_3312 0.85 +0.4 612,908 + EX28DRAFT_3312 0.85 -3.6 612,908 + EX28DRAFT_3312 0.85 -0.2 612,971 + +0.3 612,972 - -1.9 613,161 + +1.2 613,254 - -2.1 613,308 + -2.2 613,310 + -1.3 613,331 + -0.4 613,406 + -0.9 613,409 + -0.4 613,628 + EX28DRAFT_3313 0.29 -2.5 613,757 + EX28DRAFT_3313 0.42 -0.2 613,789 + EX28DRAFT_3313 0.45 -1.9 613,957 + EX28DRAFT_3313 0.63 -1.3 613,992 + EX28DRAFT_3313 0.66 -1.5 613,992 + EX28DRAFT_3313 0.66 -1.4 613,994 + EX28DRAFT_3313 0.67 -2.0 614,067 + EX28DRAFT_3313 0.74 -3.1 614,257 + -1.4 614,272 + -0.7 614,499 + EX28DRAFT_3314 0.54 -0.2 614,637 - +0.7 614,647 + -0.5 614,726 + -1.1 614,727 - -0.4 614,768 + -0.2 614,768 + -0.3 614,769 - -2.1 614,771 - -1.0 614,771 - -2.3 614,817 + -0.3 614,821 + -0.3 614,822 - -0.3 614,822 - -0.3 614,822 - -1.7 614,822 - -0.9 614,826 - -2.1 614,895 + EX28DRAFT_3315 0.50 +0.5 614,926 + EX28DRAFT_3315 0.68 -2.5 615,060 - -0.4 615,106 + -1.3 615,132 + -2.9 615,132 + -0.6 615,132 + -0.1 615,183 + +0.7 615,184 - +0.1 615,260 + +0.0
Or see this region's nucleotide sequence