Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3234 and EX28DRAFT_3235 are separated by 2 nucleotides EX28DRAFT_3235 and EX28DRAFT_3236 overlap by 4 nucleotides
EX28DRAFT_3234: EX28DRAFT_3234 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 530,864 to 532,297
_3234
EX28DRAFT_3235: EX28DRAFT_3235 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 532,300 to 532,962
_3235
EX28DRAFT_3236: EX28DRAFT_3236 - Signal transduction histidine kinase, at 532,959 to 534,002
_3236
Position (kb) 532
533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 531.376 kb on + strand, within EX28DRAFT_3234 at 531.424 kb on - strand, within EX28DRAFT_3234 at 531.623 kb on + strand, within EX28DRAFT_3234 at 531.666 kb on + strand, within EX28DRAFT_3234 at 531.666 kb on + strand, within EX28DRAFT_3234 at 531.756 kb on + strand, within EX28DRAFT_3234 at 531.804 kb on + strand, within EX28DRAFT_3234 at 531.805 kb on - strand, within EX28DRAFT_3234 at 531.914 kb on - strand, within EX28DRAFT_3234 at 531.914 kb on - strand, within EX28DRAFT_3234 at 531.917 kb on - strand, within EX28DRAFT_3234 at 531.950 kb on - strand, within EX28DRAFT_3234 at 531.990 kb on - strand, within EX28DRAFT_3234 at 532.015 kb on - strand, within EX28DRAFT_3234 at 532.136 kb on + strand, within EX28DRAFT_3234 at 532.137 kb on - strand, within EX28DRAFT_3234 at 532.194 kb on - strand at 532.194 kb on - strand at 532.240 kb on + strand at 532.272 kb on - strand at 532.272 kb on - strand at 532.274 kb on - strand at 532.284 kb on - strand at 532.291 kb on + strand at 532.291 kb on + strand at 532.296 kb on - strand at 532.307 kb on + strand at 532.307 kb on + strand at 532.307 kb on + strand at 532.308 kb on - strand at 532.313 kb on + strand at 532.314 kb on - strand at 532.560 kb on + strand, within EX28DRAFT_3235 at 532.560 kb on + strand, within EX28DRAFT_3235 at 532.665 kb on + strand, within EX28DRAFT_3235 at 532.671 kb on + strand, within EX28DRAFT_3235 at 532.677 kb on - strand, within EX28DRAFT_3235 at 532.693 kb on - strand, within EX28DRAFT_3235 at 532.721 kb on + strand, within EX28DRAFT_3235 at 532.830 kb on + strand, within EX28DRAFT_3235 at 532.831 kb on - strand, within EX28DRAFT_3235 at 532.831 kb on - strand, within EX28DRAFT_3235 at 532.834 kb on + strand, within EX28DRAFT_3235 at 532.834 kb on + strand, within EX28DRAFT_3235 at 532.834 kb on + strand, within EX28DRAFT_3235 at 532.834 kb on + strand, within EX28DRAFT_3235 at 532.863 kb on + strand, within EX28DRAFT_3235 at 533.023 kb on + strand at 533.229 kb on - strand, within EX28DRAFT_3236 at 533.269 kb on + strand, within EX28DRAFT_3236 at 533.269 kb on + strand, within EX28DRAFT_3236 at 533.270 kb on - strand, within EX28DRAFT_3236 at 533.270 kb on - strand, within EX28DRAFT_3236 at 533.282 kb on + strand, within EX28DRAFT_3236 at 533.282 kb on + strand, within EX28DRAFT_3236 at 533.283 kb on - strand, within EX28DRAFT_3236 at 533.283 kb on - strand, within EX28DRAFT_3236 at 533.283 kb on - strand, within EX28DRAFT_3236 at 533.287 kb on - strand, within EX28DRAFT_3236 at 533.287 kb on - strand, within EX28DRAFT_3236 at 533.354 kb on + strand, within EX28DRAFT_3236 at 533.355 kb on - strand, within EX28DRAFT_3236 at 533.441 kb on + strand, within EX28DRAFT_3236 at 533.477 kb on - strand, within EX28DRAFT_3236 at 533.630 kb on + strand, within EX28DRAFT_3236 at 533.630 kb on + strand, within EX28DRAFT_3236 at 533.631 kb on - strand, within EX28DRAFT_3236 at 533.631 kb on - strand, within EX28DRAFT_3236 at 533.648 kb on + strand, within EX28DRAFT_3236 at 533.750 kb on + strand, within EX28DRAFT_3236 at 533.750 kb on + strand, within EX28DRAFT_3236 at 533.751 kb on - strand, within EX28DRAFT_3236 at 533.751 kb on - strand, within EX28DRAFT_3236 at 533.840 kb on + strand, within EX28DRAFT_3236 at 533.841 kb on - strand, within EX28DRAFT_3236
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 531,376 + EX28DRAFT_3234 0.36 -0.2 531,424 - EX28DRAFT_3234 0.39 +1.1 531,623 + EX28DRAFT_3234 0.53 +0.0 531,666 + EX28DRAFT_3234 0.56 -0.2 531,666 + EX28DRAFT_3234 0.56 +0.2 531,756 + EX28DRAFT_3234 0.62 +2.1 531,804 + EX28DRAFT_3234 0.66 -0.9 531,805 - EX28DRAFT_3234 0.66 -0.9 531,914 - EX28DRAFT_3234 0.73 -1.1 531,914 - EX28DRAFT_3234 0.73 +0.0 531,917 - EX28DRAFT_3234 0.73 +0.3 531,950 - EX28DRAFT_3234 0.76 -0.3 531,990 - EX28DRAFT_3234 0.79 -0.3 532,015 - EX28DRAFT_3234 0.80 -0.2 532,136 + EX28DRAFT_3234 0.89 +0.7 532,137 - EX28DRAFT_3234 0.89 -0.7 532,194 - +0.1 532,194 - +0.7 532,240 + +1.0 532,272 - -1.7 532,272 - -1.4 532,274 - +0.4 532,284 - -0.1 532,291 + -0.2 532,291 + -1.3 532,296 - +0.5 532,307 + -1.1 532,307 + -1.3 532,307 + +0.4 532,308 - +1.0 532,313 + +1.2 532,314 - -0.0 532,560 + EX28DRAFT_3235 0.39 +0.4 532,560 + EX28DRAFT_3235 0.39 -0.7 532,665 + EX28DRAFT_3235 0.55 +0.2 532,671 + EX28DRAFT_3235 0.56 -1.1 532,677 - EX28DRAFT_3235 0.57 -2.0 532,693 - EX28DRAFT_3235 0.59 +0.8 532,721 + EX28DRAFT_3235 0.63 -1.2 532,830 + EX28DRAFT_3235 0.80 -0.2 532,831 - EX28DRAFT_3235 0.80 -1.7 532,831 - EX28DRAFT_3235 0.80 +1.7 532,834 + EX28DRAFT_3235 0.81 -1.4 532,834 + EX28DRAFT_3235 0.81 -0.5 532,834 + EX28DRAFT_3235 0.81 +0.6 532,834 + EX28DRAFT_3235 0.81 -0.2 532,863 + EX28DRAFT_3235 0.85 -1.4 533,023 + +1.0 533,229 - EX28DRAFT_3236 0.26 -0.9 533,269 + EX28DRAFT_3236 0.30 -1.1 533,269 + EX28DRAFT_3236 0.30 -1.9 533,270 - EX28DRAFT_3236 0.30 +0.4 533,270 - EX28DRAFT_3236 0.30 +0.6 533,282 + EX28DRAFT_3236 0.31 +0.8 533,282 + EX28DRAFT_3236 0.31 +0.1 533,283 - EX28DRAFT_3236 0.31 +0.3 533,283 - EX28DRAFT_3236 0.31 -0.3 533,283 - EX28DRAFT_3236 0.31 +0.0 533,287 - EX28DRAFT_3236 0.31 -0.2 533,287 - EX28DRAFT_3236 0.31 -1.1 533,354 + EX28DRAFT_3236 0.38 +0.1 533,355 - EX28DRAFT_3236 0.38 +0.9 533,441 + EX28DRAFT_3236 0.46 +0.8 533,477 - EX28DRAFT_3236 0.50 +0.2 533,630 + EX28DRAFT_3236 0.64 +0.6 533,630 + EX28DRAFT_3236 0.64 -0.9 533,631 - EX28DRAFT_3236 0.64 -0.2 533,631 - EX28DRAFT_3236 0.64 +0.1 533,648 + EX28DRAFT_3236 0.66 +1.7 533,750 + EX28DRAFT_3236 0.76 -0.8 533,750 + EX28DRAFT_3236 0.76 +0.4 533,751 - EX28DRAFT_3236 0.76 +0.6 533,751 - EX28DRAFT_3236 0.76 +2.1 533,840 + EX28DRAFT_3236 0.84 +1.2 533,841 - EX28DRAFT_3236 0.84 +1.1
Or see this region's nucleotide sequence