Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3207 and EX28DRAFT_3208 are separated by 7 nucleotides EX28DRAFT_3208 and EX28DRAFT_3209 are separated by 78 nucleotides EX28DRAFT_3209 and EX28DRAFT_3210 are separated by 62 nucleotides
EX28DRAFT_3207: EX28DRAFT_3207 - Collagenase and related proteases, at 505,454 to 506,449
_3207
EX28DRAFT_3208: EX28DRAFT_3208 - Collagenase and related proteases, at 506,457 to 507,335
_3208
EX28DRAFT_3209: EX28DRAFT_3209 - luciferase family oxidoreductase, group 1, at 507,414 to 508,421
_3209
EX28DRAFT_3210: EX28DRAFT_3210 - aromatic amino acid transport protein, at 508,484 to 509,728
_3210
Position (kb) 507
508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 506.430 kb on - strand at 506.438 kb on - strand at 506.463 kb on + strand at 506.463 kb on + strand at 506.464 kb on - strand at 506.464 kb on - strand at 506.484 kb on + strand at 506.484 kb on + strand at 506.774 kb on + strand, within EX28DRAFT_3208 at 506.811 kb on + strand, within EX28DRAFT_3208 at 506.961 kb on + strand, within EX28DRAFT_3208 at 506.961 kb on + strand, within EX28DRAFT_3208 at 507.051 kb on - strand, within EX28DRAFT_3208 at 507.051 kb on - strand, within EX28DRAFT_3208 at 507.055 kb on - strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.139 kb on - strand, within EX28DRAFT_3208 at 507.139 kb on - strand, within EX28DRAFT_3208 at 507.139 kb on - strand, within EX28DRAFT_3208 at 507.380 kb on + strand at 507.384 kb on - strand at 507.413 kb on + strand at 507.413 kb on + strand at 507.566 kb on + strand, within EX28DRAFT_3209 at 507.566 kb on + strand, within EX28DRAFT_3209 at 507.567 kb on - strand, within EX28DRAFT_3209 at 507.567 kb on - strand, within EX28DRAFT_3209 at 507.623 kb on + strand, within EX28DRAFT_3209 at 507.624 kb on - strand, within EX28DRAFT_3209 at 507.624 kb on - strand, within EX28DRAFT_3209 at 507.624 kb on - strand, within EX28DRAFT_3209 at 507.736 kb on + strand, within EX28DRAFT_3209 at 508.083 kb on - strand, within EX28DRAFT_3209 at 508.131 kb on - strand, within EX28DRAFT_3209 at 508.233 kb on + strand, within EX28DRAFT_3209 at 508.334 kb on + strand at 508.334 kb on + strand at 508.334 kb on + strand at 508.492 kb on - strand at 508.616 kb on - strand, within EX28DRAFT_3210 at 508.625 kb on - strand, within EX28DRAFT_3210 at 508.625 kb on - strand, within EX28DRAFT_3210 at 508.661 kb on - strand, within EX28DRAFT_3210 at 508.661 kb on - strand, within EX28DRAFT_3210 at 508.692 kb on + strand, within EX28DRAFT_3210 at 508.693 kb on - strand, within EX28DRAFT_3210 at 509.010 kb on + strand, within EX28DRAFT_3210 at 509.010 kb on + strand, within EX28DRAFT_3210 at 509.010 kb on + strand, within EX28DRAFT_3210 at 509.011 kb on - strand, within EX28DRAFT_3210 at 509.079 kb on + strand, within EX28DRAFT_3210 at 509.080 kb on - strand, within EX28DRAFT_3210 at 509.080 kb on - strand, within EX28DRAFT_3210 at 509.080 kb on - strand, within EX28DRAFT_3210 at 509.258 kb on + strand, within EX28DRAFT_3210 at 509.261 kb on + strand, within EX28DRAFT_3210
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 506,430 - +3.7 506,438 - -0.7 506,463 + +0.4 506,463 + +0.3 506,464 - +0.5 506,464 - +1.2 506,484 + -1.3 506,484 + -1.3 506,774 + EX28DRAFT_3208 0.36 -1.3 506,811 + EX28DRAFT_3208 0.40 +0.3 506,961 + EX28DRAFT_3208 0.57 +0.1 506,961 + EX28DRAFT_3208 0.57 -0.5 507,051 - EX28DRAFT_3208 0.68 +0.2 507,051 - EX28DRAFT_3208 0.68 -1.2 507,055 - EX28DRAFT_3208 0.68 +0.9 507,138 + EX28DRAFT_3208 0.77 -0.7 507,138 + EX28DRAFT_3208 0.77 +0.0 507,138 + EX28DRAFT_3208 0.77 +0.8 507,138 + EX28DRAFT_3208 0.77 -0.2 507,138 + EX28DRAFT_3208 0.77 +0.6 507,138 + EX28DRAFT_3208 0.77 +0.4 507,138 + EX28DRAFT_3208 0.77 -0.0 507,138 + EX28DRAFT_3208 0.77 -0.2 507,139 - EX28DRAFT_3208 0.78 -2.1 507,139 - EX28DRAFT_3208 0.78 +2.1 507,139 - EX28DRAFT_3208 0.78 +0.2 507,380 + -2.6 507,384 - -3.3 507,413 + +0.8 507,413 + -0.5 507,566 + EX28DRAFT_3209 0.15 -1.0 507,566 + EX28DRAFT_3209 0.15 -1.0 507,567 - EX28DRAFT_3209 0.15 -0.0 507,567 - EX28DRAFT_3209 0.15 +3.1 507,623 + EX28DRAFT_3209 0.21 +0.1 507,624 - EX28DRAFT_3209 0.21 +0.2 507,624 - EX28DRAFT_3209 0.21 -1.2 507,624 - EX28DRAFT_3209 0.21 -2.1 507,736 + EX28DRAFT_3209 0.32 +0.8 508,083 - EX28DRAFT_3209 0.66 +0.0 508,131 - EX28DRAFT_3209 0.71 -0.9 508,233 + EX28DRAFT_3209 0.81 -0.3 508,334 + +0.9 508,334 + -0.7 508,334 + +0.5 508,492 - -0.9 508,616 - EX28DRAFT_3210 0.11 -0.4 508,625 - EX28DRAFT_3210 0.11 -0.7 508,625 - EX28DRAFT_3210 0.11 +1.5 508,661 - EX28DRAFT_3210 0.14 +0.7 508,661 - EX28DRAFT_3210 0.14 -0.2 508,692 + EX28DRAFT_3210 0.17 +0.6 508,693 - EX28DRAFT_3210 0.17 -0.1 509,010 + EX28DRAFT_3210 0.42 -1.1 509,010 + EX28DRAFT_3210 0.42 -0.3 509,010 + EX28DRAFT_3210 0.42 +0.6 509,011 - EX28DRAFT_3210 0.42 -0.8 509,079 + EX28DRAFT_3210 0.48 +0.1 509,080 - EX28DRAFT_3210 0.48 +0.0 509,080 - EX28DRAFT_3210 0.48 +0.8 509,080 - EX28DRAFT_3210 0.48 +0.1 509,258 + EX28DRAFT_3210 0.62 +0.3 509,261 + EX28DRAFT_3210 0.62 -1.7
Or see this region's nucleotide sequence