Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3200 and EX28DRAFT_3201 are separated by 41 nucleotides EX28DRAFT_3201 and EX28DRAFT_3202 are separated by 128 nucleotides EX28DRAFT_3202 and EX28DRAFT_3203 overlap by 21 nucleotides
EX28DRAFT_3200: EX28DRAFT_3200 - Predicted permeases, at 501,106 to 502,143
_3200
EX28DRAFT_3201: EX28DRAFT_3201 - Predicted nucleoside-diphosphate-sugar epimerases, at 502,185 to 502,829
_3201
EX28DRAFT_3202: EX28DRAFT_3202 - intracellular protease, PfpI family, at 502,958 to 503,476
_3202
EX28DRAFT_3203: EX28DRAFT_3203 - Uncharacterized protein conserved in bacteria, at 503,456 to 503,890
_3203
Position (kb) 502
503 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 501.193 kb on - strand at 501.193 kb on - strand at 501.193 kb on - strand at 501.205 kb on - strand at 501.205 kb on - strand at 501.235 kb on - strand, within EX28DRAFT_3200 at 501.440 kb on + strand, within EX28DRAFT_3200 at 501.440 kb on + strand, within EX28DRAFT_3200 at 501.440 kb on + strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.441 kb on - strand, within EX28DRAFT_3200 at 501.654 kb on + strand, within EX28DRAFT_3200 at 501.862 kb on - strand, within EX28DRAFT_3200 at 501.984 kb on + strand, within EX28DRAFT_3200 at 502.031 kb on + strand, within EX28DRAFT_3200 at 502.143 kb on + strand at 502.144 kb on - strand at 502.144 kb on - strand at 502.160 kb on + strand at 502.160 kb on + strand at 502.161 kb on - strand at 502.163 kb on + strand at 502.163 kb on + strand at 502.163 kb on + strand at 502.163 kb on + strand at 502.163 kb on + strand at 502.163 kb on + strand at 502.163 kb on + strand at 502.164 kb on - strand at 502.164 kb on - strand at 502.164 kb on - strand at 502.164 kb on - strand at 502.164 kb on - strand at 502.168 kb on + strand at 502.230 kb on - strand at 502.566 kb on - strand, within EX28DRAFT_3201 at 502.568 kb on - strand, within EX28DRAFT_3201 at 502.581 kb on - strand, within EX28DRAFT_3201 at 502.744 kb on + strand, within EX28DRAFT_3201 at 502.744 kb on + strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.745 kb on - strand, within EX28DRAFT_3201 at 502.812 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.885 kb on - strand at 502.895 kb on + strand at 502.895 kb on + strand at 502.896 kb on - strand at 502.901 kb on + strand at 502.901 kb on + strand at 502.905 kb on + strand at 502.905 kb on + strand at 502.905 kb on + strand at 502.905 kb on + strand at 502.906 kb on - strand at 502.906 kb on - strand at 502.906 kb on - strand at 502.909 kb on + strand at 503.474 kb on + strand at 503.590 kb on - strand, within EX28DRAFT_3203 at 503.590 kb on - strand, within EX28DRAFT_3203 at 503.645 kb on - strand, within EX28DRAFT_3203 at 503.761 kb on - strand, within EX28DRAFT_3203 at 503.784 kb on + strand, within EX28DRAFT_3203 at 503.784 kb on + strand, within EX28DRAFT_3203 at 503.785 kb on - strand, within EX28DRAFT_3203 at 503.787 kb on + strand, within EX28DRAFT_3203 at 503.787 kb on + strand, within EX28DRAFT_3203 at 503.790 kb on + strand, within EX28DRAFT_3203 at 503.791 kb on - strand, within EX28DRAFT_3203
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 501,193 - +0.3 501,193 - -0.1 501,193 - +0.7 501,205 - +0.2 501,205 - +3.3 501,235 - EX28DRAFT_3200 0.12 -2.7 501,440 + EX28DRAFT_3200 0.32 -0.9 501,440 + EX28DRAFT_3200 0.32 +0.3 501,440 + EX28DRAFT_3200 0.32 +0.3 501,441 - EX28DRAFT_3200 0.32 -1.1 501,441 - EX28DRAFT_3200 0.32 -0.4 501,441 - EX28DRAFT_3200 0.32 +4.3 501,441 - EX28DRAFT_3200 0.32 -0.2 501,654 + EX28DRAFT_3200 0.53 +0.0 501,862 - EX28DRAFT_3200 0.73 -1.1 501,984 + EX28DRAFT_3200 0.85 +0.4 502,031 + EX28DRAFT_3200 0.89 -1.8 502,143 + +0.3 502,144 - +0.5 502,144 - +0.3 502,160 + +3.7 502,160 + +0.6 502,161 - -0.8 502,163 + -0.2 502,163 + -0.0 502,163 + +0.7 502,163 + +1.7 502,163 + +0.5 502,163 + -0.6 502,163 + +1.1 502,164 - -2.2 502,164 - -2.0 502,164 - +0.1 502,164 - +0.1 502,164 - +2.1 502,168 + +0.1 502,230 - -0.2 502,566 - EX28DRAFT_3201 0.59 +2.0 502,568 - EX28DRAFT_3201 0.59 -0.5 502,581 - EX28DRAFT_3201 0.61 +1.1 502,744 + EX28DRAFT_3201 0.87 -0.6 502,744 + EX28DRAFT_3201 0.87 -1.4 502,745 - EX28DRAFT_3201 0.87 +0.4 502,745 - EX28DRAFT_3201 0.87 +0.1 502,745 - EX28DRAFT_3201 0.87 +1.5 502,745 - EX28DRAFT_3201 0.87 +2.8 502,745 - EX28DRAFT_3201 0.87 -0.8 502,745 - EX28DRAFT_3201 0.87 -1.1 502,745 - EX28DRAFT_3201 0.87 +1.0 502,812 - -2.1 502,885 - -0.7 502,885 - +0.1 502,885 - -0.2 502,885 - +2.1 502,885 - -0.5 502,885 - -0.7 502,895 + -0.7 502,895 + +0.3 502,896 - -0.1 502,901 + -1.3 502,901 + +0.0 502,905 + -1.0 502,905 + -0.7 502,905 + +0.1 502,905 + -0.6 502,906 - -0.2 502,906 - +0.3 502,906 - -1.5 502,909 + -3.1 503,474 + -1.0 503,590 - EX28DRAFT_3203 0.31 +2.4 503,590 - EX28DRAFT_3203 0.31 +0.9 503,645 - EX28DRAFT_3203 0.43 +2.1 503,761 - EX28DRAFT_3203 0.70 +1.2 503,784 + EX28DRAFT_3203 0.75 -0.7 503,784 + EX28DRAFT_3203 0.75 -1.4 503,785 - EX28DRAFT_3203 0.76 -0.8 503,787 + EX28DRAFT_3203 0.76 +3.2 503,787 + EX28DRAFT_3203 0.76 -0.5 503,790 + EX28DRAFT_3203 0.77 -0.9 503,791 - EX28DRAFT_3203 0.77 +0.4
Or see this region's nucleotide sequence