Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3133 and EX28DRAFT_3134 overlap by 4 nucleotides EX28DRAFT_3134 and EX28DRAFT_3135 are separated by 510 nucleotides EX28DRAFT_3135 and EX28DRAFT_3136 are separated by 0 nucleotides EX28DRAFT_3136 and EX28DRAFT_3137 are separated by 147 nucleotides
EX28DRAFT_3133: EX28DRAFT_3133 - SmpA / OmlA family, at 433,457 to 433,804
_3133
EX28DRAFT_3134: EX28DRAFT_3134 - hypothetical protein, at 433,801 to 434,226
_3134
EX28DRAFT_3135: EX28DRAFT_3135 - hypothetical protein, at 434,737 to 435,906
_3135
EX28DRAFT_3136: EX28DRAFT_3136 - Siderophore-interacting protein, at 435,907 to 436,671
_3136
EX28DRAFT_3137: EX28DRAFT_3137 - Predicted transcriptional regulators, at 436,819 to 437,313
_3137
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 433.738 kb on - strand, within EX28DRAFT_3133 at 433.830 kb on + strand at 433.953 kb on + strand, within EX28DRAFT_3134 at 434.093 kb on + strand, within EX28DRAFT_3134 at 434.151 kb on - strand, within EX28DRAFT_3134 at 434.159 kb on + strand, within EX28DRAFT_3134 at 434.285 kb on - strand at 434.318 kb on + strand at 434.322 kb on + strand at 434.508 kb on + strand at 434.508 kb on + strand at 434.509 kb on - strand at 434.510 kb on + strand at 434.696 kb on - strand at 434.714 kb on + strand at 434.715 kb on - strand at 434.715 kb on - strand at 434.888 kb on - strand, within EX28DRAFT_3135 at 434.888 kb on - strand, within EX28DRAFT_3135 at 435.068 kb on - strand, within EX28DRAFT_3135 at 435.114 kb on + strand, within EX28DRAFT_3135 at 435.196 kb on + strand, within EX28DRAFT_3135 at 435.700 kb on - strand, within EX28DRAFT_3135 at 435.735 kb on - strand, within EX28DRAFT_3135 at 435.807 kb on + strand at 435.817 kb on + strand at 436.022 kb on + strand, within EX28DRAFT_3136 at 436.022 kb on + strand, within EX28DRAFT_3136 at 436.023 kb on - strand, within EX28DRAFT_3136 at 436.023 kb on - strand, within EX28DRAFT_3136 at 436.023 kb on - strand, within EX28DRAFT_3136 at 436.124 kb on + strand, within EX28DRAFT_3136 at 436.125 kb on - strand, within EX28DRAFT_3136 at 436.131 kb on + strand, within EX28DRAFT_3136 at 436.132 kb on - strand, within EX28DRAFT_3136 at 436.133 kb on + strand, within EX28DRAFT_3136 at 436.133 kb on + strand, within EX28DRAFT_3136 at 436.134 kb on - strand, within EX28DRAFT_3136 at 436.245 kb on - strand, within EX28DRAFT_3136 at 436.400 kb on + strand, within EX28DRAFT_3136 at 436.412 kb on + strand, within EX28DRAFT_3136 at 436.412 kb on + strand, within EX28DRAFT_3136 at 436.412 kb on + strand, within EX28DRAFT_3136 at 436.432 kb on + strand, within EX28DRAFT_3136 at 436.432 kb on + strand, within EX28DRAFT_3136 at 436.515 kb on + strand, within EX28DRAFT_3136 at 436.638 kb on + strand at 436.662 kb on + strand at 436.663 kb on - strand at 436.663 kb on - strand at 436.695 kb on - strand at 436.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 433,738 - EX28DRAFT_3133 0.81 +0.9 433,830 + -3.4 433,953 + EX28DRAFT_3134 0.36 -0.9 434,093 + EX28DRAFT_3134 0.69 -1.7 434,151 - EX28DRAFT_3134 0.82 -0.4 434,159 + EX28DRAFT_3134 0.84 -1.3 434,285 - +0.7 434,318 + -2.5 434,322 + -0.0 434,508 + -2.0 434,508 + -2.5 434,509 - -0.8 434,510 + +0.2 434,696 - -0.7 434,714 + -0.9 434,715 - -1.1 434,715 - -0.9 434,888 - EX28DRAFT_3135 0.13 +0.6 434,888 - EX28DRAFT_3135 0.13 -1.8 435,068 - EX28DRAFT_3135 0.28 -2.0 435,114 + EX28DRAFT_3135 0.32 -0.2 435,196 + EX28DRAFT_3135 0.39 -1.5 435,700 - EX28DRAFT_3135 0.82 -1.4 435,735 - EX28DRAFT_3135 0.85 +0.3 435,807 + -1.4 435,817 + +0.3 436,022 + EX28DRAFT_3136 0.15 -0.2 436,022 + EX28DRAFT_3136 0.15 +4.8 436,023 - EX28DRAFT_3136 0.15 -1.1 436,023 - EX28DRAFT_3136 0.15 -1.2 436,023 - EX28DRAFT_3136 0.15 -0.0 436,124 + EX28DRAFT_3136 0.28 +1.0 436,125 - EX28DRAFT_3136 0.28 -1.0 436,131 + EX28DRAFT_3136 0.29 -0.7 436,132 - EX28DRAFT_3136 0.29 +1.5 436,133 + EX28DRAFT_3136 0.30 -2.3 436,133 + EX28DRAFT_3136 0.30 -0.1 436,134 - EX28DRAFT_3136 0.30 -0.3 436,245 - EX28DRAFT_3136 0.44 -1.8 436,400 + EX28DRAFT_3136 0.64 -0.8 436,412 + EX28DRAFT_3136 0.66 +0.2 436,412 + EX28DRAFT_3136 0.66 -0.1 436,412 + EX28DRAFT_3136 0.66 +0.4 436,432 + EX28DRAFT_3136 0.69 -1.0 436,432 + EX28DRAFT_3136 0.69 -1.8 436,515 + EX28DRAFT_3136 0.79 +0.4 436,638 + +0.2 436,662 + +0.0 436,663 - -1.1 436,663 - +0.0 436,695 - +1.0 436,702 - +0.1
Or see this region's nucleotide sequence