Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3132 and EX28DRAFT_3133 are separated by 55 nucleotides EX28DRAFT_3133 and EX28DRAFT_3134 overlap by 4 nucleotides EX28DRAFT_3134 and EX28DRAFT_3135 are separated by 510 nucleotides
EX28DRAFT_3132: EX28DRAFT_3132 - Bacteriophage CI repressor helix-turn-helix domain, at 432,826 to 433,401
_3132
EX28DRAFT_3133: EX28DRAFT_3133 - SmpA / OmlA family, at 433,457 to 433,804
_3133
EX28DRAFT_3134: EX28DRAFT_3134 - hypothetical protein, at 433,801 to 434,226
_3134
EX28DRAFT_3135: EX28DRAFT_3135 - hypothetical protein, at 434,737 to 435,906
_3135
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 433.470 kb on + strand at 433.554 kb on + strand, within EX28DRAFT_3133 at 433.554 kb on + strand, within EX28DRAFT_3133 at 433.555 kb on - strand, within EX28DRAFT_3133 at 433.558 kb on + strand, within EX28DRAFT_3133 at 433.558 kb on + strand, within EX28DRAFT_3133 at 433.582 kb on + strand, within EX28DRAFT_3133 at 433.582 kb on + strand, within EX28DRAFT_3133 at 433.582 kb on + strand, within EX28DRAFT_3133 at 433.582 kb on + strand, within EX28DRAFT_3133 at 433.583 kb on - strand, within EX28DRAFT_3133 at 433.583 kb on - strand, within EX28DRAFT_3133 at 433.583 kb on - strand, within EX28DRAFT_3133 at 433.604 kb on - strand, within EX28DRAFT_3133 at 433.604 kb on - strand, within EX28DRAFT_3133 at 433.604 kb on - strand, within EX28DRAFT_3133 at 433.619 kb on - strand, within EX28DRAFT_3133 at 433.619 kb on - strand, within EX28DRAFT_3133 at 433.706 kb on - strand, within EX28DRAFT_3133 at 433.726 kb on + strand, within EX28DRAFT_3133 at 433.738 kb on - strand, within EX28DRAFT_3133 at 433.830 kb on + strand at 433.953 kb on + strand, within EX28DRAFT_3134 at 434.093 kb on + strand, within EX28DRAFT_3134 at 434.151 kb on - strand, within EX28DRAFT_3134 at 434.159 kb on + strand, within EX28DRAFT_3134 at 434.285 kb on - strand at 434.318 kb on + strand at 434.322 kb on + strand at 434.508 kb on + strand at 434.508 kb on + strand at 434.509 kb on - strand at 434.510 kb on + strand at 434.696 kb on - strand at 434.714 kb on + strand at 434.715 kb on - strand at 434.715 kb on - strand at 434.888 kb on - strand, within EX28DRAFT_3135 at 434.888 kb on - strand, within EX28DRAFT_3135 at 435.068 kb on - strand, within EX28DRAFT_3135 at 435.114 kb on + strand, within EX28DRAFT_3135 at 435.196 kb on + strand, within EX28DRAFT_3135
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 433,470 + +2.1 433,554 + EX28DRAFT_3133 0.28 -0.6 433,554 + EX28DRAFT_3133 0.28 +0.3 433,555 - EX28DRAFT_3133 0.28 -0.6 433,558 + EX28DRAFT_3133 0.29 -1.3 433,558 + EX28DRAFT_3133 0.29 -2.0 433,582 + EX28DRAFT_3133 0.36 +0.9 433,582 + EX28DRAFT_3133 0.36 -0.9 433,582 + EX28DRAFT_3133 0.36 +1.0 433,582 + EX28DRAFT_3133 0.36 +0.7 433,583 - EX28DRAFT_3133 0.36 +1.7 433,583 - EX28DRAFT_3133 0.36 -0.6 433,583 - EX28DRAFT_3133 0.36 +0.4 433,604 - EX28DRAFT_3133 0.42 -0.0 433,604 - EX28DRAFT_3133 0.42 +0.3 433,604 - EX28DRAFT_3133 0.42 +1.7 433,619 - EX28DRAFT_3133 0.47 +0.2 433,619 - EX28DRAFT_3133 0.47 -0.1 433,706 - EX28DRAFT_3133 0.72 +1.3 433,726 + EX28DRAFT_3133 0.77 -0.2 433,738 - EX28DRAFT_3133 0.81 +0.9 433,830 + -3.4 433,953 + EX28DRAFT_3134 0.36 -0.9 434,093 + EX28DRAFT_3134 0.69 -1.7 434,151 - EX28DRAFT_3134 0.82 -0.4 434,159 + EX28DRAFT_3134 0.84 -1.3 434,285 - +0.7 434,318 + -2.5 434,322 + -0.0 434,508 + -2.0 434,508 + -2.5 434,509 - -0.8 434,510 + +0.2 434,696 - -0.7 434,714 + -0.9 434,715 - -1.1 434,715 - -0.9 434,888 - EX28DRAFT_3135 0.13 +0.6 434,888 - EX28DRAFT_3135 0.13 -1.8 435,068 - EX28DRAFT_3135 0.28 -2.0 435,114 + EX28DRAFT_3135 0.32 -0.2 435,196 + EX28DRAFT_3135 0.39 -1.5
Or see this region's nucleotide sequence