Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3096 and EX28DRAFT_3097 overlap by 1 nucleotides EX28DRAFT_3097 and EX28DRAFT_3098 are separated by 9 nucleotides EX28DRAFT_3098 and EX28DRAFT_3099 are separated by 44 nucleotides
EX28DRAFT_3096: EX28DRAFT_3096 - Hydrogenase/urease accessory protein, at 406,656 to 407,195
_3096
EX28DRAFT_3097: EX28DRAFT_3097 - Urease accessory protein UreF, at 407,195 to 407,869
_3097
EX28DRAFT_3098: EX28DRAFT_3098 - urease accessory protein UreG, at 407,879 to 408,496
_3098
EX28DRAFT_3099: EX28DRAFT_3099 - tRNA threonylcarbamoyl adenosine modification protein TsaD, at 408,541 to 409,554
_3099
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 406.956 kb on - strand, within EX28DRAFT_3096 at 407.396 kb on + strand, within EX28DRAFT_3097 at 407.423 kb on - strand, within EX28DRAFT_3097 at 407.423 kb on - strand, within EX28DRAFT_3097 at 407.423 kb on - strand, within EX28DRAFT_3097 at 407.447 kb on + strand, within EX28DRAFT_3097 at 407.447 kb on + strand, within EX28DRAFT_3097 at 407.569 kb on + strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.653 kb on + strand, within EX28DRAFT_3097 at 407.654 kb on - strand, within EX28DRAFT_3097 at 407.654 kb on - strand, within EX28DRAFT_3097 at 407.981 kb on + strand, within EX28DRAFT_3098 at 407.981 kb on + strand, within EX28DRAFT_3098 at 407.981 kb on + strand, within EX28DRAFT_3098 at 407.981 kb on + strand, within EX28DRAFT_3098 at 407.982 kb on - strand, within EX28DRAFT_3098 at 407.982 kb on - strand, within EX28DRAFT_3098 at 408.011 kb on + strand, within EX28DRAFT_3098 at 408.011 kb on + strand, within EX28DRAFT_3098 at 408.011 kb on + strand, within EX28DRAFT_3098 at 408.012 kb on - strand, within EX28DRAFT_3098 at 408.012 kb on - strand, within EX28DRAFT_3098 at 408.012 kb on - strand, within EX28DRAFT_3098 at 408.248 kb on + strand, within EX28DRAFT_3098 at 408.248 kb on + strand, within EX28DRAFT_3098 at 408.249 kb on - strand, within EX28DRAFT_3098 at 408.332 kb on - strand, within EX28DRAFT_3098 at 408.542 kb on + strand at 408.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 406,956 - EX28DRAFT_3096 0.56 +0.4 407,396 + EX28DRAFT_3097 0.30 +0.1 407,423 - EX28DRAFT_3097 0.34 +0.6 407,423 - EX28DRAFT_3097 0.34 -1.1 407,423 - EX28DRAFT_3097 0.34 +0.3 407,447 + EX28DRAFT_3097 0.37 +0.5 407,447 + EX28DRAFT_3097 0.37 -0.4 407,569 + EX28DRAFT_3097 0.55 +0.8 407,570 - EX28DRAFT_3097 0.56 -0.6 407,570 - EX28DRAFT_3097 0.56 -0.1 407,570 - EX28DRAFT_3097 0.56 -1.2 407,653 + EX28DRAFT_3097 0.68 +0.1 407,654 - EX28DRAFT_3097 0.68 +0.4 407,654 - EX28DRAFT_3097 0.68 -1.4 407,981 + EX28DRAFT_3098 0.17 +0.7 407,981 + EX28DRAFT_3098 0.17 -0.2 407,981 + EX28DRAFT_3098 0.17 -1.5 407,981 + EX28DRAFT_3098 0.17 +1.4 407,982 - EX28DRAFT_3098 0.17 +6.3 407,982 - EX28DRAFT_3098 0.17 -0.7 408,011 + EX28DRAFT_3098 0.21 +1.1 408,011 + EX28DRAFT_3098 0.21 +0.3 408,011 + EX28DRAFT_3098 0.21 +0.4 408,012 - EX28DRAFT_3098 0.22 -0.1 408,012 - EX28DRAFT_3098 0.22 -0.0 408,012 - EX28DRAFT_3098 0.22 -1.5 408,248 + EX28DRAFT_3098 0.60 -0.6 408,248 + EX28DRAFT_3098 0.60 +0.7 408,249 - EX28DRAFT_3098 0.60 +1.0 408,332 - EX28DRAFT_3098 0.73 -0.4 408,542 + +0.1 408,543 - -3.4
Or see this region's nucleotide sequence