Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3094 and EX28DRAFT_3095 are separated by 9 nucleotides EX28DRAFT_3095 and EX28DRAFT_3096 are separated by 9 nucleotides EX28DRAFT_3096 and EX28DRAFT_3097 overlap by 1 nucleotides
EX28DRAFT_3094: EX28DRAFT_3094 - urease, alpha subunit, at 404,469 to 406,172
_3094
EX28DRAFT_3095: EX28DRAFT_3095 - Urease accessory protein UreE, at 406,182 to 406,646
_3095
EX28DRAFT_3096: EX28DRAFT_3096 - Hydrogenase/urease accessory protein, at 406,656 to 407,195
_3096
EX28DRAFT_3097: EX28DRAFT_3097 - Urease accessory protein UreF, at 407,195 to 407,869
_3097
Position (kb) 406
407 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 405.189 kb on - strand, within EX28DRAFT_3094 at 405.344 kb on + strand, within EX28DRAFT_3094 at 405.363 kb on - strand, within EX28DRAFT_3094 at 405.379 kb on - strand, within EX28DRAFT_3094 at 405.650 kb on + strand, within EX28DRAFT_3094 at 405.684 kb on - strand, within EX28DRAFT_3094 at 405.684 kb on - strand, within EX28DRAFT_3094 at 405.687 kb on + strand, within EX28DRAFT_3094 at 405.688 kb on - strand, within EX28DRAFT_3094 at 405.688 kb on - strand, within EX28DRAFT_3094 at 405.942 kb on - strand, within EX28DRAFT_3094 at 406.067 kb on + strand at 406.068 kb on - strand at 406.117 kb on + strand at 406.188 kb on + strand at 406.188 kb on + strand at 406.189 kb on - strand at 406.189 kb on - strand at 406.189 kb on - strand at 406.189 kb on - strand at 406.193 kb on - strand at 406.504 kb on - strand, within EX28DRAFT_3095 at 406.596 kb on + strand, within EX28DRAFT_3095 at 406.597 kb on - strand, within EX28DRAFT_3095 at 406.599 kb on - strand, within EX28DRAFT_3095 at 406.599 kb on - strand, within EX28DRAFT_3095 at 406.644 kb on + strand at 406.666 kb on - strand at 406.666 kb on - strand at 406.956 kb on - strand, within EX28DRAFT_3096 at 407.396 kb on + strand, within EX28DRAFT_3097 at 407.423 kb on - strand, within EX28DRAFT_3097 at 407.423 kb on - strand, within EX28DRAFT_3097 at 407.423 kb on - strand, within EX28DRAFT_3097 at 407.447 kb on + strand, within EX28DRAFT_3097 at 407.447 kb on + strand, within EX28DRAFT_3097 at 407.569 kb on + strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 405,189 - EX28DRAFT_3094 0.42 +0.2 405,344 + EX28DRAFT_3094 0.51 -0.3 405,363 - EX28DRAFT_3094 0.52 -2.1 405,379 - EX28DRAFT_3094 0.53 -1.3 405,650 + EX28DRAFT_3094 0.69 -0.1 405,684 - EX28DRAFT_3094 0.71 +0.4 405,684 - EX28DRAFT_3094 0.71 -0.9 405,687 + EX28DRAFT_3094 0.71 +0.6 405,688 - EX28DRAFT_3094 0.72 +0.1 405,688 - EX28DRAFT_3094 0.72 +0.9 405,942 - EX28DRAFT_3094 0.86 -0.2 406,067 + -0.0 406,068 - +0.3 406,117 + +0.7 406,188 + +2.1 406,188 + +0.0 406,189 - -1.0 406,189 - -0.8 406,189 - -0.5 406,189 - +0.1 406,193 - +0.1 406,504 - EX28DRAFT_3095 0.69 -0.2 406,596 + EX28DRAFT_3095 0.89 -2.0 406,597 - EX28DRAFT_3095 0.89 +0.0 406,599 - EX28DRAFT_3095 0.90 +2.1 406,599 - EX28DRAFT_3095 0.90 -4.4 406,644 + -1.2 406,666 - +0.5 406,666 - +2.9 406,956 - EX28DRAFT_3096 0.56 +0.4 407,396 + EX28DRAFT_3097 0.30 +0.1 407,423 - EX28DRAFT_3097 0.34 +0.6 407,423 - EX28DRAFT_3097 0.34 -1.1 407,423 - EX28DRAFT_3097 0.34 +0.3 407,447 + EX28DRAFT_3097 0.37 +0.5 407,447 + EX28DRAFT_3097 0.37 -0.4 407,569 + EX28DRAFT_3097 0.55 +0.8 407,570 - EX28DRAFT_3097 0.56 -0.6 407,570 - EX28DRAFT_3097 0.56 -0.1 407,570 - EX28DRAFT_3097 0.56 -1.2
Or see this region's nucleotide sequence