Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3052

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3051 and EX28DRAFT_3052 are separated by 199 nucleotidesEX28DRAFT_3052 and EX28DRAFT_3053 are separated by 29 nucleotides EX28DRAFT_3051: EX28DRAFT_3051 - uncharacterized radical SAM protein YgiQ, at 358,363 to 360,534 _3051 EX28DRAFT_3052: EX28DRAFT_3052 - potassium uptake protein, TrkH family, at 360,734 to 362,209 _3052 EX28DRAFT_3053: EX28DRAFT_3053 - Putative multicopper oxidases, at 362,239 to 363,651 _3053 Position (kb) 360 361 362 363Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 359.805 kb on + strand, within EX28DRAFT_3051at 359.954 kb on + strand, within EX28DRAFT_3051at 359.954 kb on + strand, within EX28DRAFT_3051at 359.954 kb on + strand, within EX28DRAFT_3051at 359.998 kb on + strand, within EX28DRAFT_3051at 359.998 kb on + strand, within EX28DRAFT_3051at 360.003 kb on + strand, within EX28DRAFT_3051at 360.004 kb on - strand, within EX28DRAFT_3051at 360.004 kb on - strand, within EX28DRAFT_3051at 360.156 kb on - strand, within EX28DRAFT_3051at 360.189 kb on + strand, within EX28DRAFT_3051at 360.192 kb on - strand, within EX28DRAFT_3051at 360.261 kb on + strand, within EX28DRAFT_3051at 360.262 kb on - strand, within EX28DRAFT_3051at 360.330 kb on + strandat 360.371 kb on + strandat 360.534 kb on + strandat 360.535 kb on - strandat 360.575 kb on + strandat 360.575 kb on + strandat 360.575 kb on + strandat 360.627 kb on - strandat 360.627 kb on - strandat 360.673 kb on + strandat 360.674 kb on - strandat 360.674 kb on - strandat 360.676 kb on + strandat 360.683 kb on + strandat 360.684 kb on - strandat 360.685 kb on + strandat 360.685 kb on + strandat 360.754 kb on - strandat 360.754 kb on - strandat 360.759 kb on + strandat 360.866 kb on + strandat 360.866 kb on + strandat 360.867 kb on - strandat 360.867 kb on - strandat 360.976 kb on + strand, within EX28DRAFT_3052at 361.042 kb on - strand, within EX28DRAFT_3052at 361.146 kb on - strand, within EX28DRAFT_3052at 361.146 kb on - strand, within EX28DRAFT_3052at 361.325 kb on + strand, within EX28DRAFT_3052at 361.458 kb on - strand, within EX28DRAFT_3052at 361.652 kb on + strand, within EX28DRAFT_3052at 361.652 kb on + strand, within EX28DRAFT_3052at 361.652 kb on + strand, within EX28DRAFT_3052at 361.653 kb on - strand, within EX28DRAFT_3052at 361.653 kb on - strand, within EX28DRAFT_3052at 361.841 kb on - strand, within EX28DRAFT_3052at 361.855 kb on + strand, within EX28DRAFT_3052at 361.856 kb on - strand, within EX28DRAFT_3052at 361.903 kb on + strand, within EX28DRAFT_3052at 361.903 kb on + strand, within EX28DRAFT_3052at 361.968 kb on - strand, within EX28DRAFT_3052at 362.026 kb on + strand, within EX28DRAFT_3052at 362.027 kb on - strand, within EX28DRAFT_3052at 362.207 kb on + strandat 362.207 kb on + strandat 362.208 kb on - strandat 362.208 kb on - strandat 362.345 kb on + strandat 362.346 kb on - strandat 362.348 kb on + strandat 362.348 kb on + strandat 362.349 kb on - strandat 362.479 kb on - strand, within EX28DRAFT_3053at 362.710 kb on + strand, within EX28DRAFT_3053at 362.710 kb on + strand, within EX28DRAFT_3053at 362.711 kb on - strand, within EX28DRAFT_3053at 362.711 kb on - strand, within EX28DRAFT_3053at 362.711 kb on - strand, within EX28DRAFT_3053at 362.711 kb on - strand, within EX28DRAFT_3053at 362.711 kb on - strand, within EX28DRAFT_3053at 363.022 kb on - strand, within EX28DRAFT_3053at 363.056 kb on + strand, within EX28DRAFT_3053at 363.099 kb on + strand, within EX28DRAFT_3053at 363.103 kb on - strand, within EX28DRAFT_3053at 363.103 kb on - strand, within EX28DRAFT_3053at 363.122 kb on + strand, within EX28DRAFT_3053at 363.191 kb on + strand, within EX28DRAFT_3053at 363.191 kb on + strand, within EX28DRAFT_3053at 363.192 kb on - strand, within EX28DRAFT_3053

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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359,805 + EX28DRAFT_3051 0.66 +0.3
359,954 + EX28DRAFT_3051 0.73 -0.5
359,954 + EX28DRAFT_3051 0.73 +2.5
359,954 + EX28DRAFT_3051 0.73 -1.9
359,998 + EX28DRAFT_3051 0.75 -3.5
359,998 + EX28DRAFT_3051 0.75 -1.3
360,003 + EX28DRAFT_3051 0.76 +1.9
360,004 - EX28DRAFT_3051 0.76 +0.0
360,004 - EX28DRAFT_3051 0.76 +0.3
360,156 - EX28DRAFT_3051 0.83 -0.9
360,189 + EX28DRAFT_3051 0.84 +0.2
360,192 - EX28DRAFT_3051 0.84 -0.1
360,261 + EX28DRAFT_3051 0.87 +0.0
360,262 - EX28DRAFT_3051 0.87 -0.7
360,330 + -0.0
360,371 + -1.2
360,534 + +0.8
360,535 - -1.1
360,575 + +1.2
360,575 + -0.1
360,575 + -1.6
360,627 - -0.0
360,627 - +0.5
360,673 + -2.3
360,674 - -0.0
360,674 - +1.0
360,676 + -1.7
360,683 + +0.1
360,684 - +0.8
360,685 + +0.5
360,685 + +0.3
360,754 - -0.1
360,754 - -0.3
360,759 + +0.7
360,866 + -1.4
360,866 + +2.4
360,867 - -2.2
360,867 - +0.5
360,976 + EX28DRAFT_3052 0.16 +0.4
361,042 - EX28DRAFT_3052 0.21 +0.4
361,146 - EX28DRAFT_3052 0.28 -2.6
361,146 - EX28DRAFT_3052 0.28 -0.7
361,325 + EX28DRAFT_3052 0.40 -1.4
361,458 - EX28DRAFT_3052 0.49 -1.5
361,652 + EX28DRAFT_3052 0.62 +0.8
361,652 + EX28DRAFT_3052 0.62 -1.2
361,652 + EX28DRAFT_3052 0.62 -0.2
361,653 - EX28DRAFT_3052 0.62 -0.4
361,653 - EX28DRAFT_3052 0.62 +0.8
361,841 - EX28DRAFT_3052 0.75 -3.4
361,855 + EX28DRAFT_3052 0.76 +0.2
361,856 - EX28DRAFT_3052 0.76 +0.1
361,903 + EX28DRAFT_3052 0.79 -3.3
361,903 + EX28DRAFT_3052 0.79 -1.1
361,968 - EX28DRAFT_3052 0.84 +0.5
362,026 + EX28DRAFT_3052 0.88 -0.4
362,027 - EX28DRAFT_3052 0.88 -0.1
362,207 + -0.5
362,207 + -0.4
362,208 - +1.0
362,208 - -0.3
362,345 + -1.1
362,346 - -1.7
362,348 + +0.1
362,348 + +0.1
362,349 - -2.4
362,479 - EX28DRAFT_3053 0.17 -1.7
362,710 + EX28DRAFT_3053 0.33 +0.3
362,710 + EX28DRAFT_3053 0.33 +0.4
362,711 - EX28DRAFT_3053 0.33 -1.3
362,711 - EX28DRAFT_3053 0.33 -0.2
362,711 - EX28DRAFT_3053 0.33 +0.1
362,711 - EX28DRAFT_3053 0.33 +0.1
362,711 - EX28DRAFT_3053 0.33 +1.6
363,022 - EX28DRAFT_3053 0.55 -0.8
363,056 + EX28DRAFT_3053 0.58 +0.4
363,099 + EX28DRAFT_3053 0.61 +1.1
363,103 - EX28DRAFT_3053 0.61 -0.7
363,103 - EX28DRAFT_3053 0.61 -2.8
363,122 + EX28DRAFT_3053 0.62 +0.1
363,191 + EX28DRAFT_3053 0.67 +0.3
363,191 + EX28DRAFT_3053 0.67 -1.1
363,192 - EX28DRAFT_3053 0.67 -0.6

Or see this region's nucleotide sequence