Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3049

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3048 and EX28DRAFT_3049 are separated by 195 nucleotidesEX28DRAFT_3049 and EX28DRAFT_3050 are separated by 105 nucleotides EX28DRAFT_3048: EX28DRAFT_3048 - AraC-type DNA-binding domain-containing proteins, at 355,088 to 355,987 _3048 EX28DRAFT_3049: EX28DRAFT_3049 - Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family, at 356,183 to 357,346 _3049 EX28DRAFT_3050: EX28DRAFT_3050 - Aldo/keto reductases, related to diketogulonate reductase, at 357,452 to 358,279 _3050 Position (kb) 356 357 358Strain fitness (log2 ratio) -3 -2 -1 0 1at 355.250 kb on - strand, within EX28DRAFT_3048at 355.250 kb on - strand, within EX28DRAFT_3048at 355.268 kb on - strand, within EX28DRAFT_3048at 355.268 kb on - strand, within EX28DRAFT_3048at 355.309 kb on + strand, within EX28DRAFT_3048at 355.597 kb on + strand, within EX28DRAFT_3048at 355.598 kb on - strand, within EX28DRAFT_3048at 355.748 kb on + strand, within EX28DRAFT_3048at 355.764 kb on + strand, within EX28DRAFT_3048at 355.802 kb on - strand, within EX28DRAFT_3048at 355.803 kb on + strand, within EX28DRAFT_3048at 355.988 kb on - strandat 356.195 kb on - strandat 356.288 kb on + strandat 356.510 kb on + strand, within EX28DRAFT_3049at 356.563 kb on + strand, within EX28DRAFT_3049at 356.724 kb on - strand, within EX28DRAFT_3049at 356.776 kb on + strand, within EX28DRAFT_3049at 356.790 kb on - strand, within EX28DRAFT_3049at 356.790 kb on - strand, within EX28DRAFT_3049at 356.799 kb on - strand, within EX28DRAFT_3049at 356.913 kb on + strand, within EX28DRAFT_3049at 356.914 kb on - strand, within EX28DRAFT_3049at 356.914 kb on - strand, within EX28DRAFT_3049at 356.914 kb on - strand, within EX28DRAFT_3049at 356.914 kb on - strand, within EX28DRAFT_3049at 357.304 kb on + strandat 357.329 kb on + strandat 357.329 kb on + strandat 357.330 kb on - strandat 357.330 kb on - strandat 357.394 kb on + strandat 357.395 kb on - strandat 357.511 kb on - strandat 357.517 kb on - strandat 357.556 kb on + strand, within EX28DRAFT_3050at 357.663 kb on + strand, within EX28DRAFT_3050at 357.663 kb on + strand, within EX28DRAFT_3050at 357.664 kb on - strand, within EX28DRAFT_3050at 357.664 kb on - strand, within EX28DRAFT_3050at 357.664 kb on - strand, within EX28DRAFT_3050at 357.797 kb on + strand, within EX28DRAFT_3050at 357.866 kb on - strand, within EX28DRAFT_3050at 357.866 kb on - strand, within EX28DRAFT_3050at 357.988 kb on + strand, within EX28DRAFT_3050at 357.989 kb on - strand, within EX28DRAFT_3050at 358.072 kb on + strand, within EX28DRAFT_3050at 358.072 kb on + strand, within EX28DRAFT_3050at 358.077 kb on - strand, within EX28DRAFT_3050at 358.077 kb on - strand, within EX28DRAFT_3050at 358.277 kb on + strandat 358.277 kb on + strandat 358.286 kb on - strandat 358.321 kb on + strandat 358.322 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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355,250 - EX28DRAFT_3048 0.18 -0.9
355,250 - EX28DRAFT_3048 0.18 +0.6
355,268 - EX28DRAFT_3048 0.20 -2.1
355,268 - EX28DRAFT_3048 0.20 -1.4
355,309 + EX28DRAFT_3048 0.25 -0.6
355,597 + EX28DRAFT_3048 0.57 -1.2
355,598 - EX28DRAFT_3048 0.57 -0.1
355,748 + EX28DRAFT_3048 0.73 +0.1
355,764 + EX28DRAFT_3048 0.75 +0.8
355,802 - EX28DRAFT_3048 0.79 -1.9
355,803 + EX28DRAFT_3048 0.79 -0.1
355,988 - -1.1
356,195 - -0.1
356,288 + -1.6
356,510 + EX28DRAFT_3049 0.28 +0.3
356,563 + EX28DRAFT_3049 0.33 -0.3
356,724 - EX28DRAFT_3049 0.46 -0.4
356,776 + EX28DRAFT_3049 0.51 -0.1
356,790 - EX28DRAFT_3049 0.52 +0.1
356,790 - EX28DRAFT_3049 0.52 +1.2
356,799 - EX28DRAFT_3049 0.53 +0.8
356,913 + EX28DRAFT_3049 0.63 +0.1
356,914 - EX28DRAFT_3049 0.63 +0.0
356,914 - EX28DRAFT_3049 0.63 +0.1
356,914 - EX28DRAFT_3049 0.63 +1.0
356,914 - EX28DRAFT_3049 0.63 +0.4
357,304 + +0.1
357,329 + -0.4
357,329 + -0.5
357,330 - -0.7
357,330 - +0.2
357,394 + +0.0
357,395 - +1.1
357,511 - -0.1
357,517 - -1.2
357,556 + EX28DRAFT_3050 0.13 +0.2
357,663 + EX28DRAFT_3050 0.25 +0.2
357,663 + EX28DRAFT_3050 0.25 +0.4
357,664 - EX28DRAFT_3050 0.26 +0.5
357,664 - EX28DRAFT_3050 0.26 -1.4
357,664 - EX28DRAFT_3050 0.26 -0.6
357,797 + EX28DRAFT_3050 0.42 -0.4
357,866 - EX28DRAFT_3050 0.50 -1.4
357,866 - EX28DRAFT_3050 0.50 +1.0
357,988 + EX28DRAFT_3050 0.65 -0.5
357,989 - EX28DRAFT_3050 0.65 +1.4
358,072 + EX28DRAFT_3050 0.75 -0.4
358,072 + EX28DRAFT_3050 0.75 -0.0
358,077 - EX28DRAFT_3050 0.75 -0.5
358,077 - EX28DRAFT_3050 0.75 -1.2
358,277 + -3.3
358,277 + -0.5
358,286 - +0.5
358,321 + +0.6
358,322 - -0.6

Or see this region's nucleotide sequence