Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2985

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2983 and EX28DRAFT_2984 are separated by 51 nucleotidesEX28DRAFT_2984 and EX28DRAFT_2985 are separated by 19 nucleotidesEX28DRAFT_2985 and EX28DRAFT_2986 are separated by 87 nucleotidesEX28DRAFT_2986 and EX28DRAFT_2987 overlap by 1 nucleotides EX28DRAFT_2983: EX28DRAFT_2983 - Endonuclease I, at 296,282 to 296,989 _2983 EX28DRAFT_2984: EX28DRAFT_2984 - RNA methyltransferase, RsmE family, at 297,041 to 297,772 _2984 EX28DRAFT_2985: EX28DRAFT_2985 - glutathione synthase (EC 6.3.2.3), at 297,792 to 298,739 _2985 EX28DRAFT_2986: EX28DRAFT_2986 - Putative transcriptional regulator, at 298,827 to 299,387 _2986 EX28DRAFT_2987: EX28DRAFT_2987 - RNAse H-fold protein YqgF, at 299,387 to 299,803 _2987 Position (kb) 297 298 299Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 296.807 kb on + strand, within EX28DRAFT_2983at 296.807 kb on + strand, within EX28DRAFT_2983at 296.808 kb on - strand, within EX28DRAFT_2983at 296.808 kb on - strand, within EX28DRAFT_2983at 296.813 kb on + strand, within EX28DRAFT_2983at 296.813 kb on + strand, within EX28DRAFT_2983at 296.813 kb on + strand, within EX28DRAFT_2983at 296.813 kb on + strand, within EX28DRAFT_2983at 296.814 kb on - strand, within EX28DRAFT_2983at 296.814 kb on - strand, within EX28DRAFT_2983at 296.814 kb on - strand, within EX28DRAFT_2983at 296.954 kb on + strandat 296.992 kb on + strandat 296.992 kb on + strandat 296.992 kb on + strandat 296.993 kb on - strandat 296.993 kb on - strandat 297.011 kb on + strandat 297.011 kb on + strandat 297.011 kb on + strandat 297.041 kb on - strandat 297.059 kb on + strandat 297.059 kb on + strandat 297.077 kb on - strandat 297.159 kb on + strand, within EX28DRAFT_2984at 297.159 kb on + strand, within EX28DRAFT_2984at 297.225 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.351 kb on + strand, within EX28DRAFT_2984at 297.352 kb on - strand, within EX28DRAFT_2984at 297.352 kb on - strand, within EX28DRAFT_2984at 297.352 kb on - strand, within EX28DRAFT_2984at 297.445 kb on + strand, within EX28DRAFT_2984at 297.580 kb on + strand, within EX28DRAFT_2984at 297.901 kb on - strand, within EX28DRAFT_2985at 297.903 kb on - strand, within EX28DRAFT_2985at 298.074 kb on + strand, within EX28DRAFT_2985at 298.074 kb on + strand, within EX28DRAFT_2985at 298.075 kb on - strand, within EX28DRAFT_2985at 298.075 kb on - strand, within EX28DRAFT_2985at 298.075 kb on - strand, within EX28DRAFT_2985at 298.075 kb on - strand, within EX28DRAFT_2985at 298.080 kb on + strand, within EX28DRAFT_2985at 298.081 kb on - strand, within EX28DRAFT_2985at 298.081 kb on - strand, within EX28DRAFT_2985at 298.089 kb on + strand, within EX28DRAFT_2985at 298.170 kb on + strand, within EX28DRAFT_2985at 298.390 kb on - strand, within EX28DRAFT_2985at 298.466 kb on + strand, within EX28DRAFT_2985at 298.467 kb on - strand, within EX28DRAFT_2985at 298.738 kb on - strandat 298.743 kb on - strandat 298.743 kb on - strandat 298.743 kb on - strandat 298.748 kb on + strandat 298.748 kb on + strandat 298.748 kb on + strandat 298.748 kb on + strandat 298.749 kb on - strandat 298.749 kb on - strandat 298.749 kb on - strandat 298.749 kb on - strandat 298.751 kb on + strandat 298.752 kb on - strandat 298.752 kb on - strandat 298.752 kb on - strandat 298.754 kb on + strandat 298.755 kb on - strandat 298.801 kb on + strandat 298.816 kb on + strandat 298.816 kb on + strandat 298.816 kb on + strandat 298.816 kb on + strandat 298.816 kb on + strandat 298.899 kb on + strand, within EX28DRAFT_2986at 298.911 kb on + strand, within EX28DRAFT_2986at 299.098 kb on + strand, within EX28DRAFT_2986at 299.111 kb on + strand, within EX28DRAFT_2986at 299.211 kb on + strand, within EX28DRAFT_2986

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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296,807 + EX28DRAFT_2983 0.74 -0.3
296,807 + EX28DRAFT_2983 0.74 +0.1
296,808 - EX28DRAFT_2983 0.74 -0.4
296,808 - EX28DRAFT_2983 0.74 -0.5
296,813 + EX28DRAFT_2983 0.75 -0.5
296,813 + EX28DRAFT_2983 0.75 +0.4
296,813 + EX28DRAFT_2983 0.75 -0.5
296,813 + EX28DRAFT_2983 0.75 -1.4
296,814 - EX28DRAFT_2983 0.75 +0.1
296,814 - EX28DRAFT_2983 0.75 +0.2
296,814 - EX28DRAFT_2983 0.75 -2.9
296,954 + -1.0
296,992 + -2.0
296,992 + -0.6
296,992 + -0.5
296,993 - +0.0
296,993 - -0.0
297,011 + -1.2
297,011 + -2.1
297,011 + -0.8
297,041 - -0.2
297,059 + -1.6
297,059 + -0.5
297,077 - -0.3
297,159 + EX28DRAFT_2984 0.16 -2.1
297,159 + EX28DRAFT_2984 0.16 +1.3
297,225 + EX28DRAFT_2984 0.25 +0.3
297,351 + EX28DRAFT_2984 0.42 +0.5
297,351 + EX28DRAFT_2984 0.42 -3.0
297,351 + EX28DRAFT_2984 0.42 -0.9
297,351 + EX28DRAFT_2984 0.42 -0.0
297,351 + EX28DRAFT_2984 0.42 -0.3
297,352 - EX28DRAFT_2984 0.42 +1.1
297,352 - EX28DRAFT_2984 0.42 +0.3
297,352 - EX28DRAFT_2984 0.42 -2.1
297,445 + EX28DRAFT_2984 0.55 -0.9
297,580 + EX28DRAFT_2984 0.74 -0.2
297,901 - EX28DRAFT_2985 0.11 -1.5
297,903 - EX28DRAFT_2985 0.12 -1.1
298,074 + EX28DRAFT_2985 0.30 -2.6
298,074 + EX28DRAFT_2985 0.30 -2.1
298,075 - EX28DRAFT_2985 0.30 -1.2
298,075 - EX28DRAFT_2985 0.30 -4.0
298,075 - EX28DRAFT_2985 0.30 -1.7
298,075 - EX28DRAFT_2985 0.30 -4.3
298,080 + EX28DRAFT_2985 0.30 -2.6
298,081 - EX28DRAFT_2985 0.30 -0.9
298,081 - EX28DRAFT_2985 0.30 +0.1
298,089 + EX28DRAFT_2985 0.31 -2.8
298,170 + EX28DRAFT_2985 0.40 -1.5
298,390 - EX28DRAFT_2985 0.63 -2.4
298,466 + EX28DRAFT_2985 0.71 -0.5
298,467 - EX28DRAFT_2985 0.71 -3.4
298,738 - +1.0
298,743 - -1.9
298,743 - -0.4
298,743 - +0.1
298,748 + -0.2
298,748 + +2.1
298,748 + -1.2
298,748 + -1.0
298,749 - -0.2
298,749 - +1.5
298,749 - -3.4
298,749 - +0.0
298,751 + -0.6
298,752 - -1.1
298,752 - +0.5
298,752 - +0.7
298,754 + -1.6
298,755 - +0.4
298,801 + +0.4
298,816 + +2.9
298,816 + -1.6
298,816 + -1.2
298,816 + -1.0
298,816 + -0.3
298,899 + EX28DRAFT_2986 0.13 -3.9
298,911 + EX28DRAFT_2986 0.15 -0.0
299,098 + EX28DRAFT_2986 0.48 -0.8
299,111 + EX28DRAFT_2986 0.51 -0.1
299,211 + EX28DRAFT_2986 0.68 -0.7

Or see this region's nucleotide sequence