Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2936

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2935 and EX28DRAFT_2936 are separated by 777 nucleotidesEX28DRAFT_2936 and EX28DRAFT_2937 are separated by 22 nucleotidesEX28DRAFT_2937 and EX28DRAFT_2938 are separated by 554 nucleotidesEX28DRAFT_2938 and EX28DRAFT_2939 are separated by 80 nucleotides EX28DRAFT_2935: EX28DRAFT_2935 - ABC-type spermidine/putrescine transport systems, ATPase components, at 245,896 to 246,966 _2935 EX28DRAFT_2936: EX28DRAFT_2936 - Uracil DNA glycosylase superfamily, at 247,744 to 248,346 _2936 EX28DRAFT_2937: EX28DRAFT_2937 - hypothetical protein, at 248,369 to 248,614 _2937 EX28DRAFT_2938: EX28DRAFT_2938 - tRNA, at 249,169 to 249,242 _2938 EX28DRAFT_2939: EX28DRAFT_2939 - Membrane proteins related to metalloendopeptidases, at 249,323 to 250,066 _2939 Position (kb) 247 248 249Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 246.823 kb on + strand, within EX28DRAFT_2935at 246.823 kb on + strand, within EX28DRAFT_2935at 246.823 kb on + strand, within EX28DRAFT_2935at 246.844 kb on + strand, within EX28DRAFT_2935at 246.887 kb on - strandat 246.980 kb on - strandat 247.096 kb on + strandat 247.163 kb on + strandat 247.188 kb on + strandat 247.199 kb on - strandat 247.224 kb on - strandat 247.393 kb on + strandat 247.397 kb on - strandat 247.425 kb on + strandat 247.438 kb on + strandat 247.477 kb on + strandat 247.479 kb on + strandat 247.492 kb on + strandat 247.561 kb on + strandat 247.662 kb on + strandat 247.663 kb on - strandat 247.663 kb on - strandat 247.703 kb on - strandat 247.703 kb on - strandat 247.778 kb on + strandat 247.812 kb on + strand, within EX28DRAFT_2936at 247.814 kb on + strand, within EX28DRAFT_2936at 247.831 kb on + strand, within EX28DRAFT_2936at 247.844 kb on + strand, within EX28DRAFT_2936at 247.868 kb on + strand, within EX28DRAFT_2936at 247.869 kb on - strand, within EX28DRAFT_2936at 247.869 kb on - strand, within EX28DRAFT_2936at 247.893 kb on - strand, within EX28DRAFT_2936at 247.992 kb on + strand, within EX28DRAFT_2936at 248.025 kb on + strand, within EX28DRAFT_2936at 248.034 kb on + strand, within EX28DRAFT_2936at 248.036 kb on + strand, within EX28DRAFT_2936at 248.112 kb on - strand, within EX28DRAFT_2936at 248.156 kb on + strand, within EX28DRAFT_2936at 248.233 kb on + strand, within EX28DRAFT_2936at 248.233 kb on + strand, within EX28DRAFT_2936at 248.413 kb on - strand, within EX28DRAFT_2937at 248.414 kb on + strand, within EX28DRAFT_2937at 248.414 kb on + strand, within EX28DRAFT_2937at 248.415 kb on - strand, within EX28DRAFT_2937at 248.417 kb on - strand, within EX28DRAFT_2937at 248.417 kb on - strand, within EX28DRAFT_2937at 248.423 kb on + strand, within EX28DRAFT_2937at 248.424 kb on - strand, within EX28DRAFT_2937at 248.424 kb on - strand, within EX28DRAFT_2937at 248.509 kb on - strand, within EX28DRAFT_2937at 248.512 kb on + strand, within EX28DRAFT_2937at 248.513 kb on - strand, within EX28DRAFT_2937at 248.523 kb on + strand, within EX28DRAFT_2937at 248.590 kb on + strandat 248.590 kb on + strandat 248.627 kb on + strandat 248.631 kb on + strandat 248.683 kb on - strandat 248.701 kb on + strandat 248.710 kb on + strandat 248.711 kb on - strandat 248.844 kb on - strandat 248.864 kb on + strandat 248.865 kb on - strandat 248.865 kb on - strandat 248.931 kb on + strandat 248.971 kb on - strandat 249.081 kb on + strandat 249.093 kb on + strandat 249.098 kb on + strandat 249.099 kb on - strandat 249.223 kb on + strand, within EX28DRAFT_2938at 249.264 kb on + strandat 249.264 kb on + strandat 249.264 kb on + strandat 249.283 kb on + strandat 249.283 kb on + strandat 249.284 kb on - strandat 249.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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246,823 + EX28DRAFT_2935 0.87 +0.9
246,823 + EX28DRAFT_2935 0.87 -1.0
246,823 + EX28DRAFT_2935 0.87 -0.1
246,844 + EX28DRAFT_2935 0.89 +0.3
246,887 - -1.0
246,980 - -2.9
247,096 + +0.7
247,163 + -1.5
247,188 + -1.6
247,199 - -0.7
247,224 - +1.3
247,393 + -0.2
247,397 - -0.9
247,425 + -0.7
247,438 + +0.9
247,477 + -1.1
247,479 + -0.6
247,492 + -0.4
247,561 + +0.6
247,662 + +0.1
247,663 - -2.0
247,663 - +0.5
247,703 - -1.2
247,703 - +1.4
247,778 + -1.7
247,812 + EX28DRAFT_2936 0.11 +0.2
247,814 + EX28DRAFT_2936 0.12 -0.2
247,831 + EX28DRAFT_2936 0.14 +0.4
247,844 + EX28DRAFT_2936 0.17 -1.8
247,868 + EX28DRAFT_2936 0.21 -0.9
247,869 - EX28DRAFT_2936 0.21 +0.6
247,869 - EX28DRAFT_2936 0.21 -0.7
247,893 - EX28DRAFT_2936 0.25 -0.5
247,992 + EX28DRAFT_2936 0.41 -0.9
248,025 + EX28DRAFT_2936 0.47 +0.4
248,034 + EX28DRAFT_2936 0.48 -0.5
248,036 + EX28DRAFT_2936 0.48 +0.9
248,112 - EX28DRAFT_2936 0.61 +0.7
248,156 + EX28DRAFT_2936 0.68 +3.1
248,233 + EX28DRAFT_2936 0.81 -1.3
248,233 + EX28DRAFT_2936 0.81 -0.5
248,413 - EX28DRAFT_2937 0.18 +0.6
248,414 + EX28DRAFT_2937 0.18 +1.1
248,414 + EX28DRAFT_2937 0.18 +1.1
248,415 - EX28DRAFT_2937 0.19 -0.3
248,417 - EX28DRAFT_2937 0.20 -1.9
248,417 - EX28DRAFT_2937 0.20 +0.0
248,423 + EX28DRAFT_2937 0.22 -1.0
248,424 - EX28DRAFT_2937 0.22 +0.0
248,424 - EX28DRAFT_2937 0.22 +0.1
248,509 - EX28DRAFT_2937 0.57 +0.6
248,512 + EX28DRAFT_2937 0.58 -0.8
248,513 - EX28DRAFT_2937 0.59 +1.4
248,523 + EX28DRAFT_2937 0.63 -1.4
248,590 + -0.2
248,590 + +4.1
248,627 + +1.5
248,631 + +0.5
248,683 - -1.7
248,701 + -0.9
248,710 + -0.2
248,711 - -0.6
248,844 - -0.3
248,864 + -0.5
248,865 - +0.8
248,865 - +1.1
248,931 + -2.4
248,971 - -0.7
249,081 + -1.1
249,093 + -1.6
249,098 + -3.8
249,099 - +4.7
249,223 + EX28DRAFT_2938 0.73 -3.6
249,264 + -0.8
249,264 + -2.1
249,264 + +0.9
249,283 + -0.2
249,283 + -3.0
249,284 - -0.8
249,284 - -4.2

Or see this region's nucleotide sequence