Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2882

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2881 and EX28DRAFT_2882 overlap by 8 nucleotidesEX28DRAFT_2882 and EX28DRAFT_2883 are separated by 39 nucleotides EX28DRAFT_2881: EX28DRAFT_2881 - Predicted SAM-dependent methyltransferase, at 188,258 to 189,358 _2881 EX28DRAFT_2882: EX28DRAFT_2882 - Uncharacterized small membrane protein, at 189,351 to 189,746 _2882 EX28DRAFT_2883: EX28DRAFT_2883 - Transcriptional regulator, at 189,786 to 190,703 _2883 Position (kb) 189 190Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 188.358 kb on - strandat 188.358 kb on - strandat 188.394 kb on + strand, within EX28DRAFT_2881at 188.555 kb on - strand, within EX28DRAFT_2881at 188.659 kb on + strand, within EX28DRAFT_2881at 188.659 kb on + strand, within EX28DRAFT_2881at 188.680 kb on - strand, within EX28DRAFT_2881at 188.680 kb on - strand, within EX28DRAFT_2881at 188.719 kb on - strand, within EX28DRAFT_2881at 188.719 kb on - strand, within EX28DRAFT_2881at 188.719 kb on - strand, within EX28DRAFT_2881at 188.843 kb on - strand, within EX28DRAFT_2881at 188.868 kb on + strand, within EX28DRAFT_2881at 188.875 kb on - strand, within EX28DRAFT_2881at 188.881 kb on + strand, within EX28DRAFT_2881at 188.882 kb on - strand, within EX28DRAFT_2881at 188.883 kb on + strand, within EX28DRAFT_2881at 188.884 kb on - strand, within EX28DRAFT_2881at 188.911 kb on + strand, within EX28DRAFT_2881at 188.940 kb on + strand, within EX28DRAFT_2881at 189.020 kb on - strand, within EX28DRAFT_2881at 189.237 kb on + strand, within EX28DRAFT_2881at 189.341 kb on + strandat 189.341 kb on + strandat 189.341 kb on + strandat 189.342 kb on - strandat 189.403 kb on - strand, within EX28DRAFT_2882at 189.405 kb on + strand, within EX28DRAFT_2882at 189.444 kb on - strand, within EX28DRAFT_2882at 189.484 kb on + strand, within EX28DRAFT_2882at 189.509 kb on + strand, within EX28DRAFT_2882at 189.548 kb on + strand, within EX28DRAFT_2882at 189.611 kb on - strand, within EX28DRAFT_2882at 189.663 kb on + strand, within EX28DRAFT_2882at 189.666 kb on + strand, within EX28DRAFT_2882at 189.666 kb on + strand, within EX28DRAFT_2882at 189.666 kb on + strand, within EX28DRAFT_2882at 189.666 kb on + strand, within EX28DRAFT_2882at 189.667 kb on - strand, within EX28DRAFT_2882at 189.667 kb on - strand, within EX28DRAFT_2882at 189.667 kb on - strand, within EX28DRAFT_2882at 189.667 kb on - strand, within EX28DRAFT_2882at 189.701 kb on + strand, within EX28DRAFT_2882at 189.751 kb on - strandat 189.751 kb on - strandat 189.788 kb on - strandat 189.797 kb on - strandat 189.867 kb on - strandat 189.901 kb on + strand, within EX28DRAFT_2883at 189.902 kb on - strand, within EX28DRAFT_2883at 189.924 kb on + strand, within EX28DRAFT_2883at 189.925 kb on - strand, within EX28DRAFT_2883at 189.925 kb on - strand, within EX28DRAFT_2883at 189.933 kb on - strand, within EX28DRAFT_2883at 190.070 kb on + strand, within EX28DRAFT_2883at 190.070 kb on + strand, within EX28DRAFT_2883at 190.083 kb on + strand, within EX28DRAFT_2883at 190.084 kb on - strand, within EX28DRAFT_2883at 190.182 kb on + strand, within EX28DRAFT_2883at 190.222 kb on + strand, within EX28DRAFT_2883at 190.635 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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188,358 - -0.8
188,358 - -0.1
188,394 + EX28DRAFT_2881 0.12 -1.2
188,555 - EX28DRAFT_2881 0.27 -0.2
188,659 + EX28DRAFT_2881 0.36 -0.8
188,659 + EX28DRAFT_2881 0.36 -0.9
188,680 - EX28DRAFT_2881 0.38 +0.9
188,680 - EX28DRAFT_2881 0.38 -0.8
188,719 - EX28DRAFT_2881 0.42 +4.1
188,719 - EX28DRAFT_2881 0.42 +0.0
188,719 - EX28DRAFT_2881 0.42 -0.3
188,843 - EX28DRAFT_2881 0.53 +0.6
188,868 + EX28DRAFT_2881 0.55 -1.9
188,875 - EX28DRAFT_2881 0.56 +0.4
188,881 + EX28DRAFT_2881 0.57 +2.4
188,882 - EX28DRAFT_2881 0.57 -0.1
188,883 + EX28DRAFT_2881 0.57 -0.0
188,884 - EX28DRAFT_2881 0.57 +0.2
188,911 + EX28DRAFT_2881 0.59 -2.2
188,940 + EX28DRAFT_2881 0.62 -0.4
189,020 - EX28DRAFT_2881 0.69 +1.4
189,237 + EX28DRAFT_2881 0.89 +0.1
189,341 + -0.4
189,341 + -1.2
189,341 + +0.0
189,342 - +0.5
189,403 - EX28DRAFT_2882 0.13 +0.8
189,405 + EX28DRAFT_2882 0.14 -0.1
189,444 - EX28DRAFT_2882 0.23 -1.1
189,484 + EX28DRAFT_2882 0.34 -1.4
189,509 + EX28DRAFT_2882 0.40 +0.1
189,548 + EX28DRAFT_2882 0.50 +0.4
189,611 - EX28DRAFT_2882 0.66 +0.5
189,663 + EX28DRAFT_2882 0.79 -0.1
189,666 + EX28DRAFT_2882 0.80 -0.5
189,666 + EX28DRAFT_2882 0.80 -0.4
189,666 + EX28DRAFT_2882 0.80 +0.2
189,666 + EX28DRAFT_2882 0.80 -0.4
189,667 - EX28DRAFT_2882 0.80 -2.1
189,667 - EX28DRAFT_2882 0.80 +0.8
189,667 - EX28DRAFT_2882 0.80 +0.7
189,667 - EX28DRAFT_2882 0.80 +0.1
189,701 + EX28DRAFT_2882 0.88 +0.4
189,751 - -1.5
189,751 - +0.4
189,788 - -0.7
189,797 - +0.1
189,867 - +1.3
189,901 + EX28DRAFT_2883 0.13 +1.1
189,902 - EX28DRAFT_2883 0.13 +2.4
189,924 + EX28DRAFT_2883 0.15 -1.5
189,925 - EX28DRAFT_2883 0.15 +0.5
189,925 - EX28DRAFT_2883 0.15 +0.2
189,933 - EX28DRAFT_2883 0.16 +1.8
190,070 + EX28DRAFT_2883 0.31 -0.5
190,070 + EX28DRAFT_2883 0.31 +0.4
190,083 + EX28DRAFT_2883 0.32 -0.8
190,084 - EX28DRAFT_2883 0.32 +1.1
190,182 + EX28DRAFT_2883 0.43 -1.0
190,222 + EX28DRAFT_2883 0.47 -1.7
190,635 - +0.9

Or see this region's nucleotide sequence