Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2871 and EX28DRAFT_2872 are separated by 24 nucleotides EX28DRAFT_2872 and EX28DRAFT_2873 overlap by 4 nucleotides EX28DRAFT_2873 and EX28DRAFT_2874 are separated by 55 nucleotides EX28DRAFT_2874 and EX28DRAFT_2875 are separated by 218 nucleotides
EX28DRAFT_2871: EX28DRAFT_2871 - Flavodoxins, at 178,890 to 179,339
_2871
EX28DRAFT_2872: EX28DRAFT_2872 - Pseudouridylate synthases, 23S RNA-specific, at 179,364 to 180,140
_2872
EX28DRAFT_2873: EX28DRAFT_2873 - Uncharacterized protein conserved in bacteria, at 180,137 to 180,466
_2873
EX28DRAFT_2874: EX28DRAFT_2874 - RNA, at 180,522 to 180,878
_2874
EX28DRAFT_2875: EX28DRAFT_2875 - Syd protein (SUKH-2), at 181,097 to 181,642
_2875
Position (kb) 180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 179.188 kb on + strand, within EX28DRAFT_2871 at 179.188 kb on + strand, within EX28DRAFT_2871 at 179.188 kb on + strand, within EX28DRAFT_2871 at 179.189 kb on - strand, within EX28DRAFT_2871 at 179.189 kb on - strand, within EX28DRAFT_2871 at 179.192 kb on + strand, within EX28DRAFT_2871 at 179.193 kb on - strand, within EX28DRAFT_2871 at 179.193 kb on - strand, within EX28DRAFT_2871 at 179.193 kb on - strand, within EX28DRAFT_2871 at 179.268 kb on + strand, within EX28DRAFT_2871 at 179.269 kb on - strand, within EX28DRAFT_2871 at 179.269 kb on - strand, within EX28DRAFT_2871 at 179.269 kb on - strand, within EX28DRAFT_2871 at 179.343 kb on - strand at 179.343 kb on - strand at 179.343 kb on - strand at 180.302 kb on + strand, within EX28DRAFT_2873 at 180.466 kb on + strand at 180.467 kb on - strand at 180.469 kb on + strand at 180.503 kb on + strand at 180.503 kb on + strand at 180.504 kb on - strand at 180.543 kb on - strand at 180.893 kb on + strand at 180.893 kb on + strand at 180.893 kb on + strand at 180.894 kb on - strand at 180.919 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 181.063 kb on - strand at 181.099 kb on - strand at 181.213 kb on + strand, within EX28DRAFT_2875 at 181.264 kb on + strand, within EX28DRAFT_2875 at 181.355 kb on - strand, within EX28DRAFT_2875 at 181.401 kb on + strand, within EX28DRAFT_2875
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 179,188 + EX28DRAFT_2871 0.66 -0.1 179,188 + EX28DRAFT_2871 0.66 -0.9 179,188 + EX28DRAFT_2871 0.66 +1.5 179,189 - EX28DRAFT_2871 0.66 -0.1 179,189 - EX28DRAFT_2871 0.66 +0.5 179,192 + EX28DRAFT_2871 0.67 -1.3 179,193 - EX28DRAFT_2871 0.67 +0.2 179,193 - EX28DRAFT_2871 0.67 +1.6 179,193 - EX28DRAFT_2871 0.67 -3.0 179,268 + EX28DRAFT_2871 0.84 +1.0 179,269 - EX28DRAFT_2871 0.84 +0.6 179,269 - EX28DRAFT_2871 0.84 +0.4 179,269 - EX28DRAFT_2871 0.84 -1.1 179,343 - +0.1 179,343 - +0.6 179,343 - +2.9 180,302 + EX28DRAFT_2873 0.50 -1.6 180,466 + +0.6 180,467 - -1.0 180,469 + +0.4 180,503 + -1.5 180,503 + -0.3 180,504 - +1.1 180,543 - +1.1 180,893 + +1.2 180,893 + +0.9 180,893 + +1.0 180,894 - +0.1 180,919 - +0.2 180,952 - +0.8 180,952 - +0.1 181,063 - -1.8 181,099 - -1.3 181,213 + EX28DRAFT_2875 0.21 +0.8 181,264 + EX28DRAFT_2875 0.31 -0.9 181,355 - EX28DRAFT_2875 0.47 +2.1 181,401 + EX28DRAFT_2875 0.56 -1.8
Or see this region's nucleotide sequence