Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2829 and EX28DRAFT_2830 are separated by 139 nucleotides EX28DRAFT_2830 and EX28DRAFT_2831 are separated by 10 nucleotides EX28DRAFT_2831 and EX28DRAFT_2832 overlap by 11 nucleotides EX28DRAFT_2832 and EX28DRAFT_2833 are separated by 171 nucleotides
EX28DRAFT_2829: EX28DRAFT_2829 - DNA mismatch repair protein MutS, at 131,614 to 134,175
_2829
EX28DRAFT_2830: EX28DRAFT_2830 - hypothetical protein, at 134,315 to 134,536
_2830
EX28DRAFT_2831: EX28DRAFT_2831 - UbiD family decarboxylase, at 134,547 to 135,974
_2831
EX28DRAFT_2832: EX28DRAFT_2832 - polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases, at 135,964 to 136,566
_2832
EX28DRAFT_2833: EX28DRAFT_2833 - Transcriptional regulators, at 136,738 to 137,145
_2833
Position (kb) 134
135
136 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 133.717 kb on + strand, within EX28DRAFT_2829 at 133.717 kb on + strand, within EX28DRAFT_2829 at 133.718 kb on - strand, within EX28DRAFT_2829 at 133.718 kb on - strand, within EX28DRAFT_2829 at 133.893 kb on + strand, within EX28DRAFT_2829 at 133.893 kb on + strand, within EX28DRAFT_2829 at 133.893 kb on + strand, within EX28DRAFT_2829 at 133.894 kb on - strand, within EX28DRAFT_2829 at 133.894 kb on - strand, within EX28DRAFT_2829 at 133.894 kb on - strand, within EX28DRAFT_2829 at 133.894 kb on - strand, within EX28DRAFT_2829 at 133.894 kb on - strand, within EX28DRAFT_2829 at 133.925 kb on - strand at 133.925 kb on - strand at 134.043 kb on + strand at 134.153 kb on - strand at 134.280 kb on + strand at 134.318 kb on + strand at 134.318 kb on + strand at 134.439 kb on + strand, within EX28DRAFT_2830 at 134.439 kb on + strand, within EX28DRAFT_2830 at 134.440 kb on - strand, within EX28DRAFT_2830 at 134.440 kb on - strand, within EX28DRAFT_2830 at 134.506 kb on + strand, within EX28DRAFT_2830 at 134.788 kb on - strand, within EX28DRAFT_2831 at 134.832 kb on + strand, within EX28DRAFT_2831 at 134.924 kb on + strand, within EX28DRAFT_2831 at 134.925 kb on - strand, within EX28DRAFT_2831 at 134.947 kb on + strand, within EX28DRAFT_2831 at 134.988 kb on - strand, within EX28DRAFT_2831 at 135.031 kb on + strand, within EX28DRAFT_2831 at 135.062 kb on - strand, within EX28DRAFT_2831 at 135.139 kb on + strand, within EX28DRAFT_2831 at 135.139 kb on + strand, within EX28DRAFT_2831 at 135.313 kb on + strand, within EX28DRAFT_2831 at 135.314 kb on - strand, within EX28DRAFT_2831 at 135.366 kb on - strand, within EX28DRAFT_2831 at 135.481 kb on + strand, within EX28DRAFT_2831 at 135.482 kb on - strand, within EX28DRAFT_2831 at 135.633 kb on - strand, within EX28DRAFT_2831 at 135.978 kb on + strand at 135.978 kb on + strand at 135.979 kb on - strand at 135.979 kb on - strand at 136.112 kb on + strand, within EX28DRAFT_2832 at 136.113 kb on - strand, within EX28DRAFT_2832 at 136.113 kb on - strand, within EX28DRAFT_2832 at 136.115 kb on + strand, within EX28DRAFT_2832 at 136.116 kb on - strand, within EX28DRAFT_2832 at 136.356 kb on + strand, within EX28DRAFT_2832 at 136.556 kb on - strand at 136.607 kb on + strand at 136.607 kb on + strand at 136.607 kb on + strand at 136.608 kb on - strand at 136.608 kb on - strand at 136.608 kb on - strand at 136.612 kb on + strand at 136.908 kb on + strand, within EX28DRAFT_2833
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 133,717 + EX28DRAFT_2829 0.82 -0.1 133,717 + EX28DRAFT_2829 0.82 -1.3 133,718 - EX28DRAFT_2829 0.82 +0.3 133,718 - EX28DRAFT_2829 0.82 -0.9 133,893 + EX28DRAFT_2829 0.89 -0.1 133,893 + EX28DRAFT_2829 0.89 -1.1 133,893 + EX28DRAFT_2829 0.89 +2.7 133,894 - EX28DRAFT_2829 0.89 +0.2 133,894 - EX28DRAFT_2829 0.89 +0.2 133,894 - EX28DRAFT_2829 0.89 +0.8 133,894 - EX28DRAFT_2829 0.89 +0.6 133,894 - EX28DRAFT_2829 0.89 +0.3 133,925 - -0.9 133,925 - +0.5 134,043 + -0.3 134,153 - -0.7 134,280 + -0.2 134,318 + -0.9 134,318 + -0.2 134,439 + EX28DRAFT_2830 0.56 -0.1 134,439 + EX28DRAFT_2830 0.56 -0.3 134,440 - EX28DRAFT_2830 0.56 -2.1 134,440 - EX28DRAFT_2830 0.56 +0.6 134,506 + EX28DRAFT_2830 0.86 +0.8 134,788 - EX28DRAFT_2831 0.17 -2.4 134,832 + EX28DRAFT_2831 0.20 -1.0 134,924 + EX28DRAFT_2831 0.26 -1.6 134,925 - EX28DRAFT_2831 0.26 +0.9 134,947 + EX28DRAFT_2831 0.28 -1.1 134,988 - EX28DRAFT_2831 0.31 -1.6 135,031 + EX28DRAFT_2831 0.34 -0.2 135,062 - EX28DRAFT_2831 0.36 +0.9 135,139 + EX28DRAFT_2831 0.41 -0.9 135,139 + EX28DRAFT_2831 0.41 +0.0 135,313 + EX28DRAFT_2831 0.54 +0.6 135,314 - EX28DRAFT_2831 0.54 +0.6 135,366 - EX28DRAFT_2831 0.57 +2.3 135,481 + EX28DRAFT_2831 0.65 -0.3 135,482 - EX28DRAFT_2831 0.65 +1.2 135,633 - EX28DRAFT_2831 0.76 -2.5 135,978 + -1.9 135,978 + -3.9 135,979 - -1.8 135,979 - +1.7 136,112 + EX28DRAFT_2832 0.25 -0.1 136,113 - EX28DRAFT_2832 0.25 +0.2 136,113 - EX28DRAFT_2832 0.25 -0.8 136,115 + EX28DRAFT_2832 0.25 -2.2 136,116 - EX28DRAFT_2832 0.25 +0.5 136,356 + EX28DRAFT_2832 0.65 -1.2 136,556 - -3.5 136,607 + +0.8 136,607 + +0.2 136,607 + -0.6 136,608 - -0.3 136,608 - -0.2 136,608 - +0.4 136,612 + +0.7 136,908 + EX28DRAFT_2833 0.42 -3.1
Or see this region's nucleotide sequence