Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2826

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2824 and EX28DRAFT_2825 overlap by 1 nucleotidesEX28DRAFT_2825 and EX28DRAFT_2826 are separated by 16 nucleotidesEX28DRAFT_2826 and EX28DRAFT_2827 are separated by 5 nucleotidesEX28DRAFT_2827 and EX28DRAFT_2828 are separated by 175 nucleotidesEX28DRAFT_2828 and EX28DRAFT_2829 are separated by 113 nucleotides EX28DRAFT_2824: EX28DRAFT_2824 - ABC-type Fe3+-siderophore transport system, permease component, at 127,709 to 128,746 _2824 EX28DRAFT_2825: EX28DRAFT_2825 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 128,746 to 129,507 _2825 EX28DRAFT_2826: EX28DRAFT_2826 - Major Facilitator Superfamily, at 129,524 to 130,744 _2826 EX28DRAFT_2827: EX28DRAFT_2827 - Nitrous oxide-stimulated promoter, at 130,750 to 131,094 _2827 EX28DRAFT_2828: EX28DRAFT_2828 - Toxin SymE, type I toxin-antitoxin system, at 131,270 to 131,500 _2828 EX28DRAFT_2829: EX28DRAFT_2829 - DNA mismatch repair protein MutS, at 131,614 to 134,175 _2829 Position (kb) 129 130 131Strain fitness (log2 ratio) -2 -1 0 1 2 3at 128.722 kb on + strandat 128.722 kb on + strandat 128.723 kb on - strandat 128.723 kb on - strandat 128.741 kb on - strandat 128.781 kb on - strandat 128.866 kb on - strand, within EX28DRAFT_2825at 129.135 kb on + strand, within EX28DRAFT_2825at 129.136 kb on - strand, within EX28DRAFT_2825at 129.189 kb on + strand, within EX28DRAFT_2825at 129.409 kb on - strand, within EX28DRAFT_2825at 129.414 kb on - strand, within EX28DRAFT_2825at 129.564 kb on + strandat 129.600 kb on - strandat 129.826 kb on + strand, within EX28DRAFT_2826at 130.056 kb on + strand, within EX28DRAFT_2826at 130.057 kb on - strand, within EX28DRAFT_2826at 130.082 kb on + strand, within EX28DRAFT_2826at 130.175 kb on - strand, within EX28DRAFT_2826at 130.185 kb on - strand, within EX28DRAFT_2826at 130.205 kb on + strand, within EX28DRAFT_2826at 130.311 kb on + strand, within EX28DRAFT_2826at 130.311 kb on + strand, within EX28DRAFT_2826at 130.312 kb on - strand, within EX28DRAFT_2826at 130.354 kb on - strand, within EX28DRAFT_2826at 130.521 kb on + strand, within EX28DRAFT_2826at 130.521 kb on + strand, within EX28DRAFT_2826at 130.521 kb on + strand, within EX28DRAFT_2826at 130.665 kb on - strandat 130.766 kb on + strandat 130.766 kb on + strandat 130.845 kb on + strand, within EX28DRAFT_2827at 130.846 kb on - strand, within EX28DRAFT_2827at 130.957 kb on - strand, within EX28DRAFT_2827at 130.957 kb on - strand, within EX28DRAFT_2827at 131.036 kb on + strand, within EX28DRAFT_2827at 131.037 kb on - strand, within EX28DRAFT_2827at 131.223 kb on + strandat 131.269 kb on + strandat 131.298 kb on - strand, within EX28DRAFT_2828at 131.319 kb on - strand, within EX28DRAFT_2828at 131.392 kb on - strand, within EX28DRAFT_2828at 131.423 kb on - strand, within EX28DRAFT_2828at 131.478 kb on + strandat 131.546 kb on - strandat 131.546 kb on - strandat 131.607 kb on + strandat 131.607 kb on + strandat 131.608 kb on - strandat 131.663 kb on - strandat 131.729 kb on + strandat 131.729 kb on + strandat 131.730 kb on - strandat 131.730 kb on - strandat 131.730 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
128,722 + -0.2
128,722 + +0.3
128,723 - -1.5
128,723 - -1.2
128,741 - +1.0
128,781 - -0.8
128,866 - EX28DRAFT_2825 0.16 +0.4
129,135 + EX28DRAFT_2825 0.51 +0.2
129,136 - EX28DRAFT_2825 0.51 -0.9
129,189 + EX28DRAFT_2825 0.58 +0.6
129,409 - EX28DRAFT_2825 0.87 -2.5
129,414 - EX28DRAFT_2825 0.88 +2.4
129,564 + -0.8
129,600 - -0.3
129,826 + EX28DRAFT_2826 0.25 +0.7
130,056 + EX28DRAFT_2826 0.44 +0.5
130,057 - EX28DRAFT_2826 0.44 -2.7
130,082 + EX28DRAFT_2826 0.46 -0.6
130,175 - EX28DRAFT_2826 0.53 -0.0
130,185 - EX28DRAFT_2826 0.54 +0.8
130,205 + EX28DRAFT_2826 0.56 +0.5
130,311 + EX28DRAFT_2826 0.64 +0.5
130,311 + EX28DRAFT_2826 0.64 -1.2
130,312 - EX28DRAFT_2826 0.65 +0.5
130,354 - EX28DRAFT_2826 0.68 +0.8
130,521 + EX28DRAFT_2826 0.82 +0.7
130,521 + EX28DRAFT_2826 0.82 +1.5
130,521 + EX28DRAFT_2826 0.82 -2.1
130,665 - -0.3
130,766 + +0.1
130,766 + -0.7
130,845 + EX28DRAFT_2827 0.28 +0.8
130,846 - EX28DRAFT_2827 0.28 -1.3
130,957 - EX28DRAFT_2827 0.60 -0.4
130,957 - EX28DRAFT_2827 0.60 -0.5
131,036 + EX28DRAFT_2827 0.83 -0.7
131,037 - EX28DRAFT_2827 0.83 -1.7
131,223 + -0.3
131,269 + -0.5
131,298 - EX28DRAFT_2828 0.12 +1.0
131,319 - EX28DRAFT_2828 0.21 +0.7
131,392 - EX28DRAFT_2828 0.53 -0.9
131,423 - EX28DRAFT_2828 0.66 -0.3
131,478 + +0.7
131,546 - -1.8
131,546 - +3.0
131,607 + -1.3
131,607 + -0.4
131,608 - +0.2
131,663 - -0.5
131,729 + -0.2
131,729 + +0.0
131,730 - +0.6
131,730 - -2.7
131,730 - -0.2

Or see this region's nucleotide sequence