Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2764 and EX28DRAFT_2765 are separated by 9 nucleotides EX28DRAFT_2765 and EX28DRAFT_2766 are separated by 191 nucleotides
EX28DRAFT_2764: EX28DRAFT_2764 - ABC-type proline/glycine betaine transport system, permease component, at 71,422 to 72,492
_2764
EX28DRAFT_2765: EX28DRAFT_2765 - ABC-type proline/glycine betaine transport systems, periplasmic components, at 72,502 to 73,497
_2765
EX28DRAFT_2766: EX28DRAFT_2766 - Arabinose efflux permease, at 73,689 to 74,873
_2766
Position (kb) 72
73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 71.596 kb on - strand, within EX28DRAFT_2764 at 71.695 kb on + strand, within EX28DRAFT_2764 at 71.695 kb on + strand, within EX28DRAFT_2764 at 71.695 kb on + strand, within EX28DRAFT_2764 at 71.695 kb on + strand, within EX28DRAFT_2764 at 71.959 kb on - strand, within EX28DRAFT_2764 at 72.005 kb on - strand, within EX28DRAFT_2764 at 72.066 kb on + strand, within EX28DRAFT_2764 at 72.067 kb on - strand, within EX28DRAFT_2764 at 72.067 kb on - strand, within EX28DRAFT_2764 at 72.491 kb on - strand at 72.510 kb on + strand at 72.510 kb on + strand at 72.510 kb on + strand at 72.510 kb on + strand at 72.510 kb on + strand at 72.510 kb on + strand at 72.511 kb on - strand at 72.511 kb on - strand at 72.511 kb on - strand at 72.708 kb on - strand, within EX28DRAFT_2765 at 72.708 kb on - strand, within EX28DRAFT_2765 at 72.781 kb on + strand, within EX28DRAFT_2765 at 72.782 kb on - strand, within EX28DRAFT_2765 at 72.782 kb on - strand, within EX28DRAFT_2765 at 73.060 kb on + strand, within EX28DRAFT_2765 at 73.061 kb on - strand, within EX28DRAFT_2765 at 73.117 kb on + strand, within EX28DRAFT_2765 at 73.118 kb on - strand, within EX28DRAFT_2765 at 73.118 kb on - strand, within EX28DRAFT_2765 at 73.121 kb on - strand, within EX28DRAFT_2765 at 73.279 kb on - strand, within EX28DRAFT_2765 at 73.556 kb on - strand at 73.599 kb on + strand at 73.599 kb on + strand at 73.599 kb on + strand at 73.600 kb on - strand at 73.600 kb on - strand at 73.600 kb on - strand at 73.600 kb on - strand at 73.642 kb on + strand at 73.687 kb on + strand at 73.687 kb on + strand at 73.688 kb on - strand at 73.732 kb on + strand at 73.733 kb on - strand at 73.771 kb on - strand at 73.901 kb on + strand, within EX28DRAFT_2766 at 73.902 kb on - strand, within EX28DRAFT_2766 at 74.185 kb on + strand, within EX28DRAFT_2766 at 74.185 kb on + strand, within EX28DRAFT_2766 at 74.188 kb on - strand, within EX28DRAFT_2766 at 74.275 kb on - strand, within EX28DRAFT_2766 at 74.421 kb on + strand, within EX28DRAFT_2766 at 74.422 kb on - strand, within EX28DRAFT_2766
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 71,596 - EX28DRAFT_2764 0.16 -0.8 71,695 + EX28DRAFT_2764 0.25 +1.1 71,695 + EX28DRAFT_2764 0.25 -0.7 71,695 + EX28DRAFT_2764 0.25 +0.1 71,695 + EX28DRAFT_2764 0.25 +3.0 71,959 - EX28DRAFT_2764 0.50 -1.9 72,005 - EX28DRAFT_2764 0.54 +0.2 72,066 + EX28DRAFT_2764 0.60 -0.7 72,067 - EX28DRAFT_2764 0.60 +0.6 72,067 - EX28DRAFT_2764 0.60 +1.6 72,491 - +3.1 72,510 + +0.9 72,510 + -0.7 72,510 + +0.2 72,510 + -2.0 72,510 + +0.3 72,510 + -0.6 72,511 - +0.3 72,511 - -1.2 72,511 - +0.4 72,708 - EX28DRAFT_2765 0.21 -2.3 72,708 - EX28DRAFT_2765 0.21 -0.5 72,781 + EX28DRAFT_2765 0.28 -3.0 72,782 - EX28DRAFT_2765 0.28 -1.1 72,782 - EX28DRAFT_2765 0.28 -0.3 73,060 + EX28DRAFT_2765 0.56 +0.4 73,061 - EX28DRAFT_2765 0.56 -1.9 73,117 + EX28DRAFT_2765 0.62 +0.2 73,118 - EX28DRAFT_2765 0.62 +1.4 73,118 - EX28DRAFT_2765 0.62 +0.5 73,121 - EX28DRAFT_2765 0.62 -0.1 73,279 - EX28DRAFT_2765 0.78 -0.7 73,556 - -1.0 73,599 + +0.5 73,599 + +0.5 73,599 + +0.1 73,600 - +1.0 73,600 - +0.4 73,600 - +2.3 73,600 - -0.1 73,642 + -1.1 73,687 + -0.2 73,687 + -1.3 73,688 - +2.6 73,732 + -0.1 73,733 - -0.6 73,771 - -0.1 73,901 + EX28DRAFT_2766 0.18 -0.2 73,902 - EX28DRAFT_2766 0.18 -1.1 74,185 + EX28DRAFT_2766 0.42 -0.4 74,185 + EX28DRAFT_2766 0.42 +0.8 74,188 - EX28DRAFT_2766 0.42 -0.6 74,275 - EX28DRAFT_2766 0.49 +0.2 74,421 + EX28DRAFT_2766 0.62 +0.4 74,422 - EX28DRAFT_2766 0.62 +0.3
Or see this region's nucleotide sequence