Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2761

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2758 and EX28DRAFT_2759 are separated by 243 nucleotidesEX28DRAFT_2759 and EX28DRAFT_2760 overlap by 4 nucleotidesEX28DRAFT_2760 and EX28DRAFT_2761 overlap by 28 nucleotidesEX28DRAFT_2761 and EX28DRAFT_2762 are separated by 9 nucleotides EX28DRAFT_2758: EX28DRAFT_2758 - Uncharacterized conserved protein, at 65,593 to 65,919 _2758 EX28DRAFT_2759: EX28DRAFT_2759 - ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit (EC 1.17.4.1), at 66,163 to 66,402 _2759 EX28DRAFT_2760: EX28DRAFT_2760 - ribonucleoside-diphosphate reductase 2, operon protein nrdI, at 66,399 to 66,809 _2760 EX28DRAFT_2761: EX28DRAFT_2761 - ribonucleoside-diphosphate reductase, alpha subunit, at 66,782 to 68,926 _2761 EX28DRAFT_2762: EX28DRAFT_2762 - ribonucleoside-diphosphate reductase, class 1b, beta subunit, at 68,936 to 69,895 _2762 Position (kb) 66 67 68 69Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 65.853 kb on - strand, within EX28DRAFT_2758at 65.856 kb on + strand, within EX28DRAFT_2758at 65.856 kb on + strand, within EX28DRAFT_2758at 65.856 kb on + strand, within EX28DRAFT_2758at 65.857 kb on - strand, within EX28DRAFT_2758at 65.857 kb on - strand, within EX28DRAFT_2758at 65.918 kb on - strandat 66.033 kb on - strandat 66.078 kb on - strandat 66.078 kb on - strandat 66.104 kb on - strandat 66.104 kb on - strandat 66.399 kb on - strandat 66.414 kb on + strandat 66.414 kb on + strandat 66.512 kb on - strand, within EX28DRAFT_2760at 66.522 kb on + strand, within EX28DRAFT_2760at 66.543 kb on + strand, within EX28DRAFT_2760at 66.764 kb on + strand, within EX28DRAFT_2760at 66.858 kb on - strandat 66.992 kb on + strandat 66.993 kb on - strandat 67.106 kb on + strand, within EX28DRAFT_2761at 67.107 kb on - strand, within EX28DRAFT_2761at 67.115 kb on + strand, within EX28DRAFT_2761at 67.116 kb on - strand, within EX28DRAFT_2761at 67.118 kb on - strand, within EX28DRAFT_2761at 67.146 kb on - strand, within EX28DRAFT_2761at 67.150 kb on - strand, within EX28DRAFT_2761at 67.327 kb on + strand, within EX28DRAFT_2761at 67.339 kb on + strand, within EX28DRAFT_2761at 67.340 kb on - strand, within EX28DRAFT_2761at 67.340 kb on - strand, within EX28DRAFT_2761at 67.512 kb on - strand, within EX28DRAFT_2761at 67.673 kb on - strand, within EX28DRAFT_2761at 67.673 kb on - strand, within EX28DRAFT_2761at 67.688 kb on - strand, within EX28DRAFT_2761at 67.729 kb on + strand, within EX28DRAFT_2761at 67.874 kb on + strand, within EX28DRAFT_2761at 67.997 kb on + strand, within EX28DRAFT_2761at 68.017 kb on + strand, within EX28DRAFT_2761at 68.149 kb on + strand, within EX28DRAFT_2761at 68.271 kb on - strand, within EX28DRAFT_2761at 68.516 kb on + strand, within EX28DRAFT_2761at 68.517 kb on - strand, within EX28DRAFT_2761at 68.517 kb on - strand, within EX28DRAFT_2761at 68.561 kb on + strand, within EX28DRAFT_2761at 68.646 kb on - strand, within EX28DRAFT_2761at 68.696 kb on + strand, within EX28DRAFT_2761at 68.697 kb on - strand, within EX28DRAFT_2761at 68.697 kb on - strand, within EX28DRAFT_2761at 68.697 kb on - strand, within EX28DRAFT_2761at 68.826 kb on - strandat 68.855 kb on + strandat 68.856 kb on - strandat 68.856 kb on - strandat 69.248 kb on + strand, within EX28DRAFT_2762at 69.357 kb on - strand, within EX28DRAFT_2762at 69.446 kb on + strand, within EX28DRAFT_2762at 69.447 kb on - strand, within EX28DRAFT_2762at 69.527 kb on + strand, within EX28DRAFT_2762at 69.528 kb on - strand, within EX28DRAFT_2762at 69.538 kb on + strand, within EX28DRAFT_2762at 69.539 kb on - strand, within EX28DRAFT_2762at 69.589 kb on + strand, within EX28DRAFT_2762at 69.641 kb on + strand, within EX28DRAFT_2762at 69.657 kb on - strand, within EX28DRAFT_2762at 69.735 kb on - strand, within EX28DRAFT_2762at 69.779 kb on - strand, within EX28DRAFT_2762at 69.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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65,853 - EX28DRAFT_2758 0.80 +0.5
65,856 + EX28DRAFT_2758 0.80 +1.1
65,856 + EX28DRAFT_2758 0.80 -2.7
65,856 + EX28DRAFT_2758 0.80 -2.7
65,857 - EX28DRAFT_2758 0.81 +0.1
65,857 - EX28DRAFT_2758 0.81 -0.3
65,918 - +0.9
66,033 - -0.2
66,078 - -2.2
66,078 - +0.1
66,104 - +0.5
66,104 - -0.1
66,399 - -0.6
66,414 + -3.5
66,414 + +0.7
66,512 - EX28DRAFT_2760 0.27 -1.5
66,522 + EX28DRAFT_2760 0.30 -3.9
66,543 + EX28DRAFT_2760 0.35 +0.4
66,764 + EX28DRAFT_2760 0.89 -0.7
66,858 - +0.2
66,992 + +0.1
66,993 - -0.5
67,106 + EX28DRAFT_2761 0.15 +0.8
67,107 - EX28DRAFT_2761 0.15 +0.6
67,115 + EX28DRAFT_2761 0.16 +0.5
67,116 - EX28DRAFT_2761 0.16 -0.3
67,118 - EX28DRAFT_2761 0.16 +0.9
67,146 - EX28DRAFT_2761 0.17 +1.0
67,150 - EX28DRAFT_2761 0.17 -1.8
67,327 + EX28DRAFT_2761 0.25 -0.4
67,339 + EX28DRAFT_2761 0.26 -0.7
67,340 - EX28DRAFT_2761 0.26 +0.5
67,340 - EX28DRAFT_2761 0.26 +0.4
67,512 - EX28DRAFT_2761 0.34 +0.3
67,673 - EX28DRAFT_2761 0.42 +1.0
67,673 - EX28DRAFT_2761 0.42 -1.7
67,688 - EX28DRAFT_2761 0.42 +0.2
67,729 + EX28DRAFT_2761 0.44 -0.8
67,874 + EX28DRAFT_2761 0.51 +0.1
67,997 + EX28DRAFT_2761 0.57 +1.1
68,017 + EX28DRAFT_2761 0.58 +0.1
68,149 + EX28DRAFT_2761 0.64 +0.5
68,271 - EX28DRAFT_2761 0.69 -0.7
68,516 + EX28DRAFT_2761 0.81 +0.7
68,517 - EX28DRAFT_2761 0.81 +0.6
68,517 - EX28DRAFT_2761 0.81 -0.2
68,561 + EX28DRAFT_2761 0.83 -1.1
68,646 - EX28DRAFT_2761 0.87 +1.7
68,696 + EX28DRAFT_2761 0.89 -3.3
68,697 - EX28DRAFT_2761 0.89 -0.6
68,697 - EX28DRAFT_2761 0.89 +1.0
68,697 - EX28DRAFT_2761 0.89 +1.1
68,826 - -0.1
68,855 + -0.1
68,856 - +0.8
68,856 - -0.2
69,248 + EX28DRAFT_2762 0.33 +0.5
69,357 - EX28DRAFT_2762 0.44 -0.5
69,446 + EX28DRAFT_2762 0.53 +1.9
69,447 - EX28DRAFT_2762 0.53 -0.2
69,527 + EX28DRAFT_2762 0.62 -0.1
69,528 - EX28DRAFT_2762 0.62 -0.3
69,538 + EX28DRAFT_2762 0.63 +0.1
69,539 - EX28DRAFT_2762 0.63 -1.8
69,589 + EX28DRAFT_2762 0.68 +0.4
69,641 + EX28DRAFT_2762 0.73 +0.3
69,657 - EX28DRAFT_2762 0.75 -0.7
69,735 - EX28DRAFT_2762 0.83 +0.6
69,779 - EX28DRAFT_2762 0.88 -4.3
69,923 + +1.4

Or see this region's nucleotide sequence