Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2744 and EX28DRAFT_2745 are separated by 1 nucleotides EX28DRAFT_2745 and EX28DRAFT_2746 overlap by 4 nucleotides EX28DRAFT_2746 and EX28DRAFT_2747 are separated by 11 nucleotides
EX28DRAFT_2744: EX28DRAFT_2744 - Cytosine deaminase and related metal-dependent hydrolases, at 53,400 to 54,779
_2744
EX28DRAFT_2745: EX28DRAFT_2745 - Carbamate kinase, at 54,781 to 55,737
_2745
EX28DRAFT_2746: EX28DRAFT_2746 - hypothetical protein, at 55,734 to 57,314
_2746
EX28DRAFT_2747: EX28DRAFT_2747 - Protein of unknown function (DUF1116), at 57,326 to 58,741
_2747
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 54.782 kb on + strand at 54.783 kb on - strand at 54.783 kb on - strand at 54.783 kb on - strand at 54.802 kb on - strand at 54.970 kb on + strand, within EX28DRAFT_2745 at 54.970 kb on + strand, within EX28DRAFT_2745 at 54.970 kb on + strand, within EX28DRAFT_2745 at 54.970 kb on + strand, within EX28DRAFT_2745 at 55.093 kb on - strand, within EX28DRAFT_2745 at 55.093 kb on - strand, within EX28DRAFT_2745 at 55.363 kb on - strand, within EX28DRAFT_2745 at 55.363 kb on - strand, within EX28DRAFT_2745 at 55.381 kb on - strand, within EX28DRAFT_2745 at 55.381 kb on - strand, within EX28DRAFT_2745 at 55.556 kb on - strand, within EX28DRAFT_2745 at 55.725 kb on + strand at 55.726 kb on - strand at 55.726 kb on - strand at 55.750 kb on - strand at 55.814 kb on + strand at 55.858 kb on + strand at 56.063 kb on - strand, within EX28DRAFT_2746 at 56.354 kb on - strand, within EX28DRAFT_2746 at 56.398 kb on + strand, within EX28DRAFT_2746 at 56.398 kb on + strand, within EX28DRAFT_2746 at 57.269 kb on - strand at 57.269 kb on - strand at 57.328 kb on - strand at 57.330 kb on - strand at 57.376 kb on + strand at 57.377 kb on - strand at 57.657 kb on + strand, within EX28DRAFT_2747 at 57.711 kb on + strand, within EX28DRAFT_2747 at 57.711 kb on + strand, within EX28DRAFT_2747 at 57.868 kb on + strand, within EX28DRAFT_2747 at 57.901 kb on - strand, within EX28DRAFT_2747 at 57.988 kb on + strand, within EX28DRAFT_2747 at 58.221 kb on + strand, within EX28DRAFT_2747 at 58.222 kb on - strand, within EX28DRAFT_2747 at 58.246 kb on + strand, within EX28DRAFT_2747 at 58.247 kb on - strand, within EX28DRAFT_2747
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 54,782 + -0.3 54,783 - +0.4 54,783 - +5.2 54,783 - -0.7 54,802 - -1.5 54,970 + EX28DRAFT_2745 0.20 -0.4 54,970 + EX28DRAFT_2745 0.20 -0.7 54,970 + EX28DRAFT_2745 0.20 -1.6 54,970 + EX28DRAFT_2745 0.20 -0.1 55,093 - EX28DRAFT_2745 0.33 -0.1 55,093 - EX28DRAFT_2745 0.33 -1.2 55,363 - EX28DRAFT_2745 0.61 +0.5 55,363 - EX28DRAFT_2745 0.61 -0.3 55,381 - EX28DRAFT_2745 0.63 +3.0 55,381 - EX28DRAFT_2745 0.63 +1.3 55,556 - EX28DRAFT_2745 0.81 +1.7 55,725 + -0.0 55,726 - -2.1 55,726 - -2.1 55,750 - -0.4 55,814 + -1.1 55,858 + +0.5 56,063 - EX28DRAFT_2746 0.21 -1.4 56,354 - EX28DRAFT_2746 0.39 -0.2 56,398 + EX28DRAFT_2746 0.42 -2.1 56,398 + EX28DRAFT_2746 0.42 +0.1 57,269 - +1.4 57,269 - -0.4 57,328 - -0.5 57,330 - +0.9 57,376 + +0.2 57,377 - +0.4 57,657 + EX28DRAFT_2747 0.23 -2.6 57,711 + EX28DRAFT_2747 0.27 -0.3 57,711 + EX28DRAFT_2747 0.27 -0.8 57,868 + EX28DRAFT_2747 0.38 +2.6 57,901 - EX28DRAFT_2747 0.41 +1.2 57,988 + EX28DRAFT_2747 0.47 -0.1 58,221 + EX28DRAFT_2747 0.63 -0.7 58,222 - EX28DRAFT_2747 0.63 +3.1 58,246 + EX28DRAFT_2747 0.65 +0.4 58,247 - EX28DRAFT_2747 0.65 +0.1
Or see this region's nucleotide sequence