Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2731 and EX28DRAFT_2732 are separated by 81 nucleotides EX28DRAFT_2732 and EX28DRAFT_2733 overlap by 4 nucleotides
EX28DRAFT_2731: EX28DRAFT_2731 - VCBS repeat/type I secretion C-terminal target domain (VC_A0849 subclass), at 31,843 to 42,810
_2731
EX28DRAFT_2732: EX28DRAFT_2732 - type I secretion outer membrane protein, TolC family, at 42,892 to 44,295
_2732
EX28DRAFT_2733: EX28DRAFT_2733 - type I secretion system ATPase, LssB family, at 44,292 to 46,490
_2733
Position (kb) 42
43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 42.004 kb on + strand at 42.005 kb on - strand at 42.086 kb on - strand at 42.310 kb on + strand at 42.311 kb on - strand at 42.316 kb on + strand at 42.317 kb on - strand at 42.373 kb on + strand at 42.374 kb on - strand at 42.374 kb on - strand at 42.374 kb on - strand at 42.500 kb on - strand at 42.658 kb on + strand at 42.676 kb on - strand at 42.676 kb on - strand at 42.679 kb on - strand at 42.679 kb on - strand at 42.679 kb on - strand at 42.732 kb on + strand at 42.733 kb on - strand at 42.733 kb on - strand at 42.736 kb on - strand at 42.805 kb on - strand at 42.854 kb on - strand at 42.858 kb on - strand at 42.858 kb on - strand at 42.861 kb on - strand at 42.868 kb on + strand at 42.936 kb on - strand at 43.136 kb on - strand, within EX28DRAFT_2732 at 43.175 kb on - strand, within EX28DRAFT_2732 at 43.175 kb on - strand, within EX28DRAFT_2732 at 43.240 kb on - strand, within EX28DRAFT_2732 at 43.366 kb on - strand, within EX28DRAFT_2732 at 43.810 kb on + strand, within EX28DRAFT_2732 at 43.811 kb on - strand, within EX28DRAFT_2732 at 44.155 kb on + strand at 44.155 kb on + strand at 44.221 kb on + strand at 44.221 kb on + strand at 44.221 kb on + strand at 44.221 kb on + strand at 44.222 kb on - strand at 44.223 kb on + strand at 44.224 kb on - strand at 44.259 kb on + strand at 44.501 kb on + strand at 44.733 kb on + strand, within EX28DRAFT_2733 at 44.733 kb on + strand, within EX28DRAFT_2733 at 44.733 kb on + strand, within EX28DRAFT_2733 at 44.734 kb on - strand, within EX28DRAFT_2733 at 44.734 kb on - strand, within EX28DRAFT_2733 at 44.734 kb on - strand, within EX28DRAFT_2733 at 44.735 kb on + strand, within EX28DRAFT_2733 at 44.736 kb on - strand, within EX28DRAFT_2733 at 44.793 kb on + strand, within EX28DRAFT_2733 at 44.823 kb on - strand, within EX28DRAFT_2733 at 44.907 kb on + strand, within EX28DRAFT_2733 at 44.978 kb on + strand, within EX28DRAFT_2733 at 44.979 kb on - strand, within EX28DRAFT_2733 at 45.083 kb on + strand, within EX28DRAFT_2733 at 45.084 kb on - strand, within EX28DRAFT_2733
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 42,004 + +0.5 42,005 - -0.1 42,086 - -2.0 42,310 + +0.5 42,311 - +0.6 42,316 + +1.2 42,317 - +0.7 42,373 + +0.7 42,374 - +0.9 42,374 - +0.7 42,374 - -0.1 42,500 - -1.6 42,658 + -1.0 42,676 - -0.7 42,676 - -1.5 42,679 - -0.4 42,679 - -0.2 42,679 - -1.1 42,732 + -0.2 42,733 - -0.2 42,733 - +0.4 42,736 - -0.2 42,805 - +1.0 42,854 - -0.7 42,858 - -0.6 42,858 - +0.2 42,861 - -1.4 42,868 + -0.4 42,936 - +0.9 43,136 - EX28DRAFT_2732 0.17 +1.5 43,175 - EX28DRAFT_2732 0.20 +1.4 43,175 - EX28DRAFT_2732 0.20 -0.8 43,240 - EX28DRAFT_2732 0.25 +0.9 43,366 - EX28DRAFT_2732 0.34 +1.3 43,810 + EX28DRAFT_2732 0.65 -0.4 43,811 - EX28DRAFT_2732 0.65 -1.9 44,155 + +0.2 44,155 + +0.7 44,221 + +1.2 44,221 + -2.9 44,221 + +1.4 44,221 + -0.5 44,222 - +0.7 44,223 + +2.7 44,224 - +0.2 44,259 + +0.4 44,501 + +0.2 44,733 + EX28DRAFT_2733 0.20 +0.0 44,733 + EX28DRAFT_2733 0.20 -0.3 44,733 + EX28DRAFT_2733 0.20 +0.5 44,734 - EX28DRAFT_2733 0.20 -0.9 44,734 - EX28DRAFT_2733 0.20 -2.8 44,734 - EX28DRAFT_2733 0.20 +1.1 44,735 + EX28DRAFT_2733 0.20 -0.1 44,736 - EX28DRAFT_2733 0.20 -0.9 44,793 + EX28DRAFT_2733 0.23 +2.1 44,823 - EX28DRAFT_2733 0.24 +0.3 44,907 + EX28DRAFT_2733 0.28 -1.3 44,978 + EX28DRAFT_2733 0.31 -3.7 44,979 - EX28DRAFT_2733 0.31 +1.4 45,083 + EX28DRAFT_2733 0.36 +2.0 45,084 - EX28DRAFT_2733 0.36 +1.5
Or see this region's nucleotide sequence