Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2160

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2159 and EX28DRAFT_2160 are separated by 53 nucleotidesEX28DRAFT_2160 and EX28DRAFT_2161 are separated by 67 nucleotidesEX28DRAFT_2161 and EX28DRAFT_2162 are separated by 300 nucleotides EX28DRAFT_2159: EX28DRAFT_2159 - P pilus assembly protein, porin PapC, at 2,181,837 to 2,184,353 _2159 EX28DRAFT_2160: EX28DRAFT_2160 - P pilus assembly protein, pilin FimA, at 2,184,407 to 2,184,967 _2160 EX28DRAFT_2161: EX28DRAFT_2161 - P pilus assembly protein, pilin FimA, at 2,185,035 to 2,185,556 _2161 EX28DRAFT_2162: EX28DRAFT_2162 - hypothetical protein, at 2,185,857 to 2,186,108 _2162 Position (kb) 2184 2185Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2183.464 kb on - strand, within EX28DRAFT_2159at 2183.501 kb on + strand, within EX28DRAFT_2159at 2183.501 kb on + strand, within EX28DRAFT_2159at 2183.501 kb on + strand, within EX28DRAFT_2159at 2183.501 kb on + strand, within EX28DRAFT_2159at 2183.502 kb on - strand, within EX28DRAFT_2159at 2183.566 kb on + strand, within EX28DRAFT_2159at 2183.567 kb on - strand, within EX28DRAFT_2159at 2183.620 kb on + strand, within EX28DRAFT_2159at 2183.621 kb on - strand, within EX28DRAFT_2159at 2183.683 kb on + strand, within EX28DRAFT_2159at 2183.684 kb on - strand, within EX28DRAFT_2159at 2183.684 kb on - strand, within EX28DRAFT_2159at 2183.684 kb on - strand, within EX28DRAFT_2159at 2183.882 kb on - strand, within EX28DRAFT_2159at 2183.882 kb on - strand, within EX28DRAFT_2159at 2183.905 kb on - strand, within EX28DRAFT_2159at 2183.905 kb on - strand, within EX28DRAFT_2159at 2183.987 kb on + strand, within EX28DRAFT_2159at 2184.092 kb on + strand, within EX28DRAFT_2159at 2184.139 kb on + strandat 2184.371 kb on + strandat 2184.576 kb on - strand, within EX28DRAFT_2160at 2184.647 kb on - strand, within EX28DRAFT_2160at 2184.656 kb on - strand, within EX28DRAFT_2160at 2184.752 kb on - strand, within EX28DRAFT_2160at 2184.932 kb on + strandat 2185.114 kb on + strand, within EX28DRAFT_2161at 2185.114 kb on + strand, within EX28DRAFT_2161at 2185.115 kb on - strand, within EX28DRAFT_2161at 2185.115 kb on - strand, within EX28DRAFT_2161at 2185.172 kb on + strand, within EX28DRAFT_2161at 2185.191 kb on - strand, within EX28DRAFT_2161at 2185.448 kb on + strand, within EX28DRAFT_2161at 2185.524 kb on - strandat 2185.947 kb on + strand, within EX28DRAFT_2162

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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2,183,464 - EX28DRAFT_2159 0.65 -0.6
2,183,501 + EX28DRAFT_2159 0.66 -1.3
2,183,501 + EX28DRAFT_2159 0.66 -1.1
2,183,501 + EX28DRAFT_2159 0.66 -2.4
2,183,501 + EX28DRAFT_2159 0.66 -1.2
2,183,502 - EX28DRAFT_2159 0.66 -0.9
2,183,566 + EX28DRAFT_2159 0.69 +0.2
2,183,567 - EX28DRAFT_2159 0.69 +0.8
2,183,620 + EX28DRAFT_2159 0.71 +3.7
2,183,621 - EX28DRAFT_2159 0.71 +0.4
2,183,683 + EX28DRAFT_2159 0.73 -0.5
2,183,684 - EX28DRAFT_2159 0.73 -1.2
2,183,684 - EX28DRAFT_2159 0.73 +0.5
2,183,684 - EX28DRAFT_2159 0.73 +0.1
2,183,882 - EX28DRAFT_2159 0.81 -2.4
2,183,882 - EX28DRAFT_2159 0.81 +0.4
2,183,905 - EX28DRAFT_2159 0.82 -3.9
2,183,905 - EX28DRAFT_2159 0.82 -3.2
2,183,987 + EX28DRAFT_2159 0.85 +0.2
2,184,092 + EX28DRAFT_2159 0.90 -0.6
2,184,139 + +0.2
2,184,371 + -0.4
2,184,576 - EX28DRAFT_2160 0.30 -2.1
2,184,647 - EX28DRAFT_2160 0.43 +0.2
2,184,656 - EX28DRAFT_2160 0.44 -3.0
2,184,752 - EX28DRAFT_2160 0.61 -2.3
2,184,932 + -0.4
2,185,114 + EX28DRAFT_2161 0.15 -0.1
2,185,114 + EX28DRAFT_2161 0.15 -0.4
2,185,115 - EX28DRAFT_2161 0.15 +0.5
2,185,115 - EX28DRAFT_2161 0.15 +0.2
2,185,172 + EX28DRAFT_2161 0.26 +0.0
2,185,191 - EX28DRAFT_2161 0.30 -0.5
2,185,448 + EX28DRAFT_2161 0.79 -2.5
2,185,524 - +0.5
2,185,947 + EX28DRAFT_2162 0.36 -0.3

Or see this region's nucleotide sequence