Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1942 and EX28DRAFT_1943 overlap by 4 nucleotides EX28DRAFT_1943 and EX28DRAFT_1944 are separated by 69 nucleotides
EX28DRAFT_1942: EX28DRAFT_1942 - amidohydrolase, AtzE family, at 1,947,545 to 1,948,942
_1942
EX28DRAFT_1943: EX28DRAFT_1943 - Protein of unknown function (DUF3225), at 1,948,939 to 1,949,325
_1943
EX28DRAFT_1944: EX28DRAFT_1944 - putative urate catabolism protein, at 1,949,395 to 1,950,327
_1944
Position (kb) 1948
1949
1950 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1948.465 kb on + strand, within EX28DRAFT_1942 at 1948.587 kb on - strand, within EX28DRAFT_1942 at 1948.587 kb on - strand, within EX28DRAFT_1942 at 1948.780 kb on - strand, within EX28DRAFT_1942 at 1949.000 kb on - strand, within EX28DRAFT_1943 at 1949.396 kb on + strand at 1949.396 kb on + strand at 1949.397 kb on - strand at 1949.397 kb on - strand at 1949.478 kb on + strand at 1949.479 kb on - strand at 1949.479 kb on - strand at 1949.479 kb on - strand at 1949.480 kb on + strand at 1949.609 kb on + strand, within EX28DRAFT_1944 at 1949.610 kb on - strand, within EX28DRAFT_1944 at 1949.613 kb on + strand, within EX28DRAFT_1944 at 1949.613 kb on + strand, within EX28DRAFT_1944 at 1949.613 kb on + strand, within EX28DRAFT_1944 at 1949.614 kb on - strand, within EX28DRAFT_1944 at 1949.615 kb on + strand, within EX28DRAFT_1944 at 1949.615 kb on + strand, within EX28DRAFT_1944 at 1949.615 kb on + strand, within EX28DRAFT_1944 at 1949.615 kb on + strand, within EX28DRAFT_1944 at 1949.616 kb on - strand, within EX28DRAFT_1944 at 1949.616 kb on - strand, within EX28DRAFT_1944 at 1949.616 kb on - strand, within EX28DRAFT_1944 at 1949.759 kb on + strand, within EX28DRAFT_1944 at 1949.832 kb on - strand, within EX28DRAFT_1944 at 1949.925 kb on - strand, within EX28DRAFT_1944 at 1950.215 kb on + strand, within EX28DRAFT_1944 at 1950.215 kb on + strand, within EX28DRAFT_1944
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,948,465 + EX28DRAFT_1942 0.66 -1.1 1,948,587 - EX28DRAFT_1942 0.75 +1.1 1,948,587 - EX28DRAFT_1942 0.75 -0.3 1,948,780 - EX28DRAFT_1942 0.88 +2.8 1,949,000 - EX28DRAFT_1943 0.16 -0.3 1,949,396 + +0.8 1,949,396 + +0.9 1,949,397 - -1.5 1,949,397 - -1.3 1,949,478 + +0.0 1,949,479 - +0.5 1,949,479 - -0.0 1,949,479 - +0.5 1,949,480 + +0.1 1,949,609 + EX28DRAFT_1944 0.23 -3.0 1,949,610 - EX28DRAFT_1944 0.23 -0.2 1,949,613 + EX28DRAFT_1944 0.23 +0.2 1,949,613 + EX28DRAFT_1944 0.23 +0.6 1,949,613 + EX28DRAFT_1944 0.23 +0.3 1,949,614 - EX28DRAFT_1944 0.23 -0.1 1,949,615 + EX28DRAFT_1944 0.24 -0.2 1,949,615 + EX28DRAFT_1944 0.24 -0.3 1,949,615 + EX28DRAFT_1944 0.24 -0.2 1,949,615 + EX28DRAFT_1944 0.24 +0.1 1,949,616 - EX28DRAFT_1944 0.24 -1.0 1,949,616 - EX28DRAFT_1944 0.24 -0.4 1,949,616 - EX28DRAFT_1944 0.24 -0.4 1,949,759 + EX28DRAFT_1944 0.39 +0.4 1,949,832 - EX28DRAFT_1944 0.47 +0.2 1,949,925 - EX28DRAFT_1944 0.57 -3.2 1,950,215 + EX28DRAFT_1944 0.88 +2.0 1,950,215 + EX28DRAFT_1944 0.88 +0.4
Or see this region's nucleotide sequence