Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1896 and EX28DRAFT_1897 are separated by 232 nucleotides EX28DRAFT_1897 and EX28DRAFT_1898 are separated by 45 nucleotides EX28DRAFT_1898 and EX28DRAFT_1899 are separated by 48 nucleotides
EX28DRAFT_1896: EX28DRAFT_1896 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 1,905,166 to 1,906,104
_1896
EX28DRAFT_1897: EX28DRAFT_1897 - tRNA, at 1,906,337 to 1,906,424
_1897
EX28DRAFT_1898: EX28DRAFT_1898 - RNA, at 1,906,470 to 1,906,607
_1898
EX28DRAFT_1899: EX28DRAFT_1899 - Transcriptional regulator, at 1,906,656 to 1,907,561
_1899
Position (kb) 1906
1907 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1905.346 kb on - strand, within EX28DRAFT_1896 at 1905.347 kb on + strand, within EX28DRAFT_1896 at 1905.348 kb on - strand, within EX28DRAFT_1896 at 1905.348 kb on - strand, within EX28DRAFT_1896 at 1905.443 kb on + strand, within EX28DRAFT_1896 at 1905.523 kb on - strand, within EX28DRAFT_1896 at 1905.693 kb on + strand, within EX28DRAFT_1896 at 1905.784 kb on + strand, within EX28DRAFT_1896 at 1905.800 kb on + strand, within EX28DRAFT_1896 at 1905.800 kb on + strand, within EX28DRAFT_1896 at 1905.983 kb on + strand, within EX28DRAFT_1896 at 1905.984 kb on - strand, within EX28DRAFT_1896 at 1906.064 kb on + strand at 1906.088 kb on + strand at 1906.096 kb on + strand at 1906.097 kb on - strand at 1906.101 kb on - strand at 1906.172 kb on + strand at 1906.218 kb on + strand at 1906.218 kb on + strand at 1906.254 kb on + strand at 1906.297 kb on + strand at 1906.429 kb on + strand at 1906.429 kb on + strand at 1906.429 kb on + strand at 1906.429 kb on + strand at 1906.604 kb on + strand at 1906.604 kb on + strand at 1906.604 kb on + strand at 1906.604 kb on + strand at 1906.604 kb on + strand at 1906.604 kb on + strand at 1906.606 kb on + strand at 1906.606 kb on + strand at 1906.607 kb on - strand at 1906.678 kb on + strand at 1906.958 kb on + strand, within EX28DRAFT_1899 at 1906.959 kb on - strand, within EX28DRAFT_1899 at 1906.964 kb on + strand, within EX28DRAFT_1899 at 1906.964 kb on + strand, within EX28DRAFT_1899 at 1906.965 kb on - strand, within EX28DRAFT_1899 at 1907.092 kb on - strand, within EX28DRAFT_1899 at 1907.095 kb on - strand, within EX28DRAFT_1899 at 1907.354 kb on + strand, within EX28DRAFT_1899 at 1907.355 kb on - strand, within EX28DRAFT_1899 at 1907.365 kb on + strand, within EX28DRAFT_1899
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,905,346 - EX28DRAFT_1896 0.19 +2.2 1,905,347 + EX28DRAFT_1896 0.19 -1.9 1,905,348 - EX28DRAFT_1896 0.19 -0.0 1,905,348 - EX28DRAFT_1896 0.19 +0.5 1,905,443 + EX28DRAFT_1896 0.29 -0.0 1,905,523 - EX28DRAFT_1896 0.38 -0.0 1,905,693 + EX28DRAFT_1896 0.56 -0.2 1,905,784 + EX28DRAFT_1896 0.66 +3.6 1,905,800 + EX28DRAFT_1896 0.68 -1.0 1,905,800 + EX28DRAFT_1896 0.68 +0.3 1,905,983 + EX28DRAFT_1896 0.87 -1.1 1,905,984 - EX28DRAFT_1896 0.87 -1.1 1,906,064 + +4.4 1,906,088 + +1.3 1,906,096 + +0.6 1,906,097 - +1.8 1,906,101 - +0.1 1,906,172 + -2.1 1,906,218 + +1.0 1,906,218 + -0.3 1,906,254 + -0.2 1,906,297 + -0.5 1,906,429 + +1.0 1,906,429 + -0.1 1,906,429 + +4.0 1,906,429 + -0.7 1,906,604 + +0.4 1,906,604 + +0.6 1,906,604 + -0.3 1,906,604 + +1.8 1,906,604 + -1.2 1,906,604 + +1.8 1,906,606 + -1.0 1,906,606 + -0.2 1,906,607 - -1.6 1,906,678 + +0.3 1,906,958 + EX28DRAFT_1899 0.33 -1.5 1,906,959 - EX28DRAFT_1899 0.33 -0.2 1,906,964 + EX28DRAFT_1899 0.34 +0.8 1,906,964 + EX28DRAFT_1899 0.34 -1.7 1,906,965 - EX28DRAFT_1899 0.34 +1.1 1,907,092 - EX28DRAFT_1899 0.48 -2.1 1,907,095 - EX28DRAFT_1899 0.48 +0.2 1,907,354 + EX28DRAFT_1899 0.77 +0.6 1,907,355 - EX28DRAFT_1899 0.77 +1.0 1,907,365 + EX28DRAFT_1899 0.78 -0.8
Or see this region's nucleotide sequence