Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1732

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1730 and EX28DRAFT_1731 are separated by 35 nucleotidesEX28DRAFT_1731 and EX28DRAFT_1732 are separated by 148 nucleotidesEX28DRAFT_1732 and EX28DRAFT_1733 are separated by 101 nucleotidesEX28DRAFT_1733 and EX28DRAFT_1734 are separated by 127 nucleotides EX28DRAFT_1730: EX28DRAFT_1730 - Fructosamine-3-kinase, at 1,745,305 to 1,746,165 _1730 EX28DRAFT_1731: EX28DRAFT_1731 - YniB-like protein, at 1,746,201 to 1,746,737 _1731 EX28DRAFT_1732: EX28DRAFT_1732 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 1,746,886 to 1,747,557 _1732 EX28DRAFT_1733: EX28DRAFT_1733 - Predicted membrane-bound metal-dependent hydrolases, at 1,747,659 to 1,748,249 _1733 EX28DRAFT_1734: EX28DRAFT_1734 - Predicted Na+/dicarboxylate symporter, at 1,748,377 to 1,749,768 _1734 Position (kb) 1746 1747 1748Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1745.896 kb on - strand, within EX28DRAFT_1730at 1745.923 kb on + strand, within EX28DRAFT_1730at 1745.924 kb on - strand, within EX28DRAFT_1730at 1746.008 kb on + strand, within EX28DRAFT_1730at 1746.070 kb on + strand, within EX28DRAFT_1730at 1746.070 kb on + strand, within EX28DRAFT_1730at 1746.071 kb on - strand, within EX28DRAFT_1730at 1746.077 kb on + strand, within EX28DRAFT_1730at 1746.077 kb on + strand, within EX28DRAFT_1730at 1746.077 kb on + strand, within EX28DRAFT_1730at 1746.078 kb on - strand, within EX28DRAFT_1730at 1746.078 kb on - strand, within EX28DRAFT_1730at 1746.078 kb on - strand, within EX28DRAFT_1730at 1746.078 kb on - strand, within EX28DRAFT_1730at 1746.078 kb on - strand, within EX28DRAFT_1730at 1746.079 kb on + strand, within EX28DRAFT_1730at 1746.080 kb on - strandat 1746.081 kb on + strandat 1746.081 kb on + strandat 1746.082 kb on - strandat 1746.082 kb on - strandat 1746.082 kb on - strandat 1746.082 kb on - strandat 1746.253 kb on - strandat 1746.263 kb on + strand, within EX28DRAFT_1731at 1746.264 kb on - strand, within EX28DRAFT_1731at 1746.265 kb on + strand, within EX28DRAFT_1731at 1746.265 kb on + strand, within EX28DRAFT_1731at 1746.463 kb on + strand, within EX28DRAFT_1731at 1746.463 kb on + strand, within EX28DRAFT_1731at 1746.463 kb on + strand, within EX28DRAFT_1731at 1746.463 kb on + strand, within EX28DRAFT_1731at 1746.463 kb on + strand, within EX28DRAFT_1731at 1746.463 kb on + strand, within EX28DRAFT_1731at 1746.464 kb on - strand, within EX28DRAFT_1731at 1746.464 kb on - strand, within EX28DRAFT_1731at 1746.464 kb on - strand, within EX28DRAFT_1731at 1746.464 kb on - strand, within EX28DRAFT_1731at 1746.464 kb on - strand, within EX28DRAFT_1731at 1746.464 kb on - strand, within EX28DRAFT_1731at 1746.465 kb on + strand, within EX28DRAFT_1731at 1746.465 kb on + strand, within EX28DRAFT_1731at 1746.465 kb on + strand, within EX28DRAFT_1731at 1746.465 kb on + strand, within EX28DRAFT_1731at 1746.466 kb on - strand, within EX28DRAFT_1731at 1746.466 kb on - strand, within EX28DRAFT_1731at 1746.466 kb on - strand, within EX28DRAFT_1731at 1746.548 kb on + strand, within EX28DRAFT_1731at 1746.549 kb on - strand, within EX28DRAFT_1731at 1746.628 kb on + strand, within EX28DRAFT_1731at 1746.629 kb on - strand, within EX28DRAFT_1731at 1746.632 kb on + strand, within EX28DRAFT_1731at 1746.633 kb on - strand, within EX28DRAFT_1731at 1746.643 kb on - strand, within EX28DRAFT_1731at 1746.657 kb on - strand, within EX28DRAFT_1731at 1746.703 kb on - strandat 1746.730 kb on + strandat 1746.730 kb on + strandat 1746.751 kb on + strandat 1746.762 kb on + strandat 1746.773 kb on - strandat 1746.773 kb on - strandat 1746.779 kb on - strandat 1746.818 kb on + strandat 1746.823 kb on + strandat 1746.824 kb on - strandat 1746.824 kb on - strandat 1746.841 kb on + strandat 1746.849 kb on - strandat 1746.849 kb on - strandat 1746.849 kb on - strandat 1746.849 kb on - strandat 1747.088 kb on + strand, within EX28DRAFT_1732at 1747.089 kb on - strand, within EX28DRAFT_1732at 1747.198 kb on - strand, within EX28DRAFT_1732at 1747.245 kb on + strand, within EX28DRAFT_1732at 1747.246 kb on - strand, within EX28DRAFT_1732at 1747.246 kb on - strand, within EX28DRAFT_1732at 1747.345 kb on + strand, within EX28DRAFT_1732at 1747.346 kb on - strand, within EX28DRAFT_1732at 1747.512 kb on + strandat 1747.512 kb on + strandat 1747.612 kb on + strandat 1747.623 kb on + strandat 1747.626 kb on - strandat 1747.656 kb on - strandat 1747.702 kb on + strandat 1747.703 kb on - strandat 1747.757 kb on + strand, within EX28DRAFT_1733at 1747.757 kb on + strand, within EX28DRAFT_1733at 1747.758 kb on - strand, within EX28DRAFT_1733at 1747.758 kb on - strand, within EX28DRAFT_1733at 1747.808 kb on + strand, within EX28DRAFT_1733at 1747.987 kb on - strand, within EX28DRAFT_1733at 1747.991 kb on - strand, within EX28DRAFT_1733at 1748.131 kb on - strand, within EX28DRAFT_1733at 1748.226 kb on - strandat 1748.294 kb on - strandat 1748.359 kb on + strandat 1748.360 kb on - strandat 1748.417 kb on + strandat 1748.417 kb on + strandat 1748.417 kb on + strandat 1748.418 kb on - strandat 1748.418 kb on - strandat 1748.418 kb on - strandat 1748.424 kb on - strandat 1748.501 kb on + strandat 1748.528 kb on - strand, within EX28DRAFT_1734

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,745,896 - EX28DRAFT_1730 0.69 +0.0
1,745,923 + EX28DRAFT_1730 0.72 +0.0
1,745,924 - EX28DRAFT_1730 0.72 +0.5
1,746,008 + EX28DRAFT_1730 0.82 +0.8
1,746,070 + EX28DRAFT_1730 0.89 +1.7
1,746,070 + EX28DRAFT_1730 0.89 -2.4
1,746,071 - EX28DRAFT_1730 0.89 +1.0
1,746,077 + EX28DRAFT_1730 0.90 +2.1
1,746,077 + EX28DRAFT_1730 0.90 -2.3
1,746,077 + EX28DRAFT_1730 0.90 -0.6
1,746,078 - EX28DRAFT_1730 0.90 +0.8
1,746,078 - EX28DRAFT_1730 0.90 +0.2
1,746,078 - EX28DRAFT_1730 0.90 -3.0
1,746,078 - EX28DRAFT_1730 0.90 -0.1
1,746,078 - EX28DRAFT_1730 0.90 -0.2
1,746,079 + EX28DRAFT_1730 0.90 -1.2
1,746,080 - +1.2
1,746,081 + +0.0
1,746,081 + +0.7
1,746,082 - -2.4
1,746,082 - +0.6
1,746,082 - +0.1
1,746,082 - -0.4
1,746,253 - -0.2
1,746,263 + EX28DRAFT_1731 0.12 -1.4
1,746,264 - EX28DRAFT_1731 0.12 +0.6
1,746,265 + EX28DRAFT_1731 0.12 +1.5
1,746,265 + EX28DRAFT_1731 0.12 -0.3
1,746,463 + EX28DRAFT_1731 0.49 +0.6
1,746,463 + EX28DRAFT_1731 0.49 -0.9
1,746,463 + EX28DRAFT_1731 0.49 +1.0
1,746,463 + EX28DRAFT_1731 0.49 +1.0
1,746,463 + EX28DRAFT_1731 0.49 -2.7
1,746,463 + EX28DRAFT_1731 0.49 +0.1
1,746,464 - EX28DRAFT_1731 0.49 -2.7
1,746,464 - EX28DRAFT_1731 0.49 -0.6
1,746,464 - EX28DRAFT_1731 0.49 +0.7
1,746,464 - EX28DRAFT_1731 0.49 -0.8
1,746,464 - EX28DRAFT_1731 0.49 +0.4
1,746,464 - EX28DRAFT_1731 0.49 -1.7
1,746,465 + EX28DRAFT_1731 0.49 -1.7
1,746,465 + EX28DRAFT_1731 0.49 -0.0
1,746,465 + EX28DRAFT_1731 0.49 +0.4
1,746,465 + EX28DRAFT_1731 0.49 +0.4
1,746,466 - EX28DRAFT_1731 0.49 +0.3
1,746,466 - EX28DRAFT_1731 0.49 +0.4
1,746,466 - EX28DRAFT_1731 0.49 -0.6
1,746,548 + EX28DRAFT_1731 0.65 +2.0
1,746,549 - EX28DRAFT_1731 0.65 -1.1
1,746,628 + EX28DRAFT_1731 0.80 -1.1
1,746,629 - EX28DRAFT_1731 0.80 -0.1
1,746,632 + EX28DRAFT_1731 0.80 -0.1
1,746,633 - EX28DRAFT_1731 0.80 +0.4
1,746,643 - EX28DRAFT_1731 0.82 -2.2
1,746,657 - EX28DRAFT_1731 0.85 -0.3
1,746,703 - +0.4
1,746,730 + -0.7
1,746,730 + -0.5
1,746,751 + +0.6
1,746,762 + +0.1
1,746,773 - -0.0
1,746,773 - +0.9
1,746,779 - -1.3
1,746,818 + -0.3
1,746,823 + +1.1
1,746,824 - +1.6
1,746,824 - +1.0
1,746,841 + +0.9
1,746,849 - +0.1
1,746,849 - -0.1
1,746,849 - -1.2
1,746,849 - +0.4
1,747,088 + EX28DRAFT_1732 0.30 -0.3
1,747,089 - EX28DRAFT_1732 0.30 -1.5
1,747,198 - EX28DRAFT_1732 0.46 -0.9
1,747,245 + EX28DRAFT_1732 0.53 -0.5
1,747,246 - EX28DRAFT_1732 0.54 +0.1
1,747,246 - EX28DRAFT_1732 0.54 -2.1
1,747,345 + EX28DRAFT_1732 0.68 +0.3
1,747,346 - EX28DRAFT_1732 0.68 -0.9
1,747,512 + +0.4
1,747,512 + +1.2
1,747,612 + -0.7
1,747,623 + -0.4
1,747,626 - +1.6
1,747,656 - -0.7
1,747,702 + +0.1
1,747,703 - +0.4
1,747,757 + EX28DRAFT_1733 0.17 -0.5
1,747,757 + EX28DRAFT_1733 0.17 -0.8
1,747,758 - EX28DRAFT_1733 0.17 +0.5
1,747,758 - EX28DRAFT_1733 0.17 +0.1
1,747,808 + EX28DRAFT_1733 0.25 -1.3
1,747,987 - EX28DRAFT_1733 0.55 -1.0
1,747,991 - EX28DRAFT_1733 0.56 -3.0
1,748,131 - EX28DRAFT_1733 0.80 -1.0
1,748,226 - +0.3
1,748,294 - +0.5
1,748,359 + -1.7
1,748,360 - -2.7
1,748,417 + +0.4
1,748,417 + +0.3
1,748,417 + -0.3
1,748,418 - -0.6
1,748,418 - +0.2
1,748,418 - -0.9
1,748,424 - +1.0
1,748,501 + +0.3
1,748,528 - EX28DRAFT_1734 0.11 -0.5

Or see this region's nucleotide sequence