Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1474

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1473 and EX28DRAFT_1474 are separated by 336 nucleotidesEX28DRAFT_1474 and EX28DRAFT_1475 overlap by 77 nucleotidesEX28DRAFT_1475 and EX28DRAFT_1476 are separated by 100 nucleotides EX28DRAFT_1473: EX28DRAFT_1473 - RND family efflux transporter, MFP subunit, at 1,488,510 to 1,489,685 _1473 EX28DRAFT_1474: EX28DRAFT_1474 - AraC-type DNA-binding domain-containing proteins, at 1,490,022 to 1,490,372 _1474 EX28DRAFT_1475: EX28DRAFT_1475 - Transcriptional regulator, at 1,490,296 to 1,491,210 _1475 EX28DRAFT_1476: EX28DRAFT_1476 - Predicted amidohydrolase, at 1,491,311 to 1,492,291 _1476 Position (kb) 1490 1491Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1489.034 kb on - strand, within EX28DRAFT_1473at 1489.439 kb on - strand, within EX28DRAFT_1473at 1489.439 kb on - strand, within EX28DRAFT_1473at 1489.517 kb on + strand, within EX28DRAFT_1473at 1489.692 kb on + strandat 1489.991 kb on - strandat 1490.051 kb on - strandat 1490.157 kb on - strand, within EX28DRAFT_1474at 1490.219 kb on - strand, within EX28DRAFT_1474at 1490.308 kb on - strandat 1490.366 kb on - strandat 1490.366 kb on - strandat 1490.371 kb on - strandat 1490.545 kb on - strand, within EX28DRAFT_1475at 1490.545 kb on - strand, within EX28DRAFT_1475at 1490.612 kb on - strand, within EX28DRAFT_1475at 1490.623 kb on + strand, within EX28DRAFT_1475at 1490.748 kb on - strand, within EX28DRAFT_1475at 1490.792 kb on - strand, within EX28DRAFT_1475at 1490.792 kb on - strand, within EX28DRAFT_1475at 1490.792 kb on - strand, within EX28DRAFT_1475at 1490.886 kb on + strand, within EX28DRAFT_1475at 1490.935 kb on - strand, within EX28DRAFT_1475at 1490.976 kb on + strand, within EX28DRAFT_1475at 1490.976 kb on + strand, within EX28DRAFT_1475at 1491.078 kb on + strand, within EX28DRAFT_1475at 1491.078 kb on + strand, within EX28DRAFT_1475at 1491.078 kb on + strand, within EX28DRAFT_1475at 1491.078 kb on + strand, within EX28DRAFT_1475at 1491.078 kb on + strand, within EX28DRAFT_1475at 1491.079 kb on - strand, within EX28DRAFT_1475at 1491.079 kb on - strand, within EX28DRAFT_1475at 1491.079 kb on - strand, within EX28DRAFT_1475at 1491.158 kb on + strandat 1491.162 kb on + strandat 1491.163 kb on - strandat 1491.194 kb on - strandat 1491.255 kb on + strandat 1491.279 kb on - strandat 1491.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,489,034 - EX28DRAFT_1473 0.45 +1.4
1,489,439 - EX28DRAFT_1473 0.79 +0.9
1,489,439 - EX28DRAFT_1473 0.79 -3.1
1,489,517 + EX28DRAFT_1473 0.86 -0.5
1,489,692 + -0.6
1,489,991 - -1.4
1,490,051 - -0.5
1,490,157 - EX28DRAFT_1474 0.38 -2.0
1,490,219 - EX28DRAFT_1474 0.56 -2.4
1,490,308 - -0.2
1,490,366 - -0.1
1,490,366 - -0.7
1,490,371 - -0.7
1,490,545 - EX28DRAFT_1475 0.27 +0.7
1,490,545 - EX28DRAFT_1475 0.27 +0.6
1,490,612 - EX28DRAFT_1475 0.35 +2.2
1,490,623 + EX28DRAFT_1475 0.36 +1.7
1,490,748 - EX28DRAFT_1475 0.49 -2.8
1,490,792 - EX28DRAFT_1475 0.54 -1.7
1,490,792 - EX28DRAFT_1475 0.54 -0.3
1,490,792 - EX28DRAFT_1475 0.54 +1.3
1,490,886 + EX28DRAFT_1475 0.64 -0.3
1,490,935 - EX28DRAFT_1475 0.70 -2.3
1,490,976 + EX28DRAFT_1475 0.74 -0.4
1,490,976 + EX28DRAFT_1475 0.74 +0.4
1,491,078 + EX28DRAFT_1475 0.85 +0.3
1,491,078 + EX28DRAFT_1475 0.85 -0.4
1,491,078 + EX28DRAFT_1475 0.85 +0.0
1,491,078 + EX28DRAFT_1475 0.85 -1.8
1,491,078 + EX28DRAFT_1475 0.85 +2.1
1,491,079 - EX28DRAFT_1475 0.86 -0.7
1,491,079 - EX28DRAFT_1475 0.86 +0.3
1,491,079 - EX28DRAFT_1475 0.86 -0.8
1,491,158 + -1.6
1,491,162 + +0.0
1,491,163 - -0.7
1,491,194 - +1.5
1,491,255 + +0.1
1,491,279 - +0.9
1,491,279 - -0.2

Or see this region's nucleotide sequence